Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29142 | 3' | -62.3 | NC_006146.1 | + | 4663 | 0.68 | 0.492293 |
Target: 5'- -cGCCGUccugggccGGGuGGGCgAGGCgggGGCAg- -3' miRNA: 3'- uaUGGCA--------CCC-CCCGgUCCGa--CCGUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 33214 | 0.68 | 0.492293 |
Target: 5'- -gGCCGgaGGGGGaGCCgggaugGGGCUGGgGUUc -3' miRNA: 3'- uaUGGCa-CCCCC-CGG------UCCGACCgUAA- -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 39514 | 0.67 | 0.511179 |
Target: 5'- cUGCUGUGGGuGGCUgauGGGCUGGgGg- -3' miRNA: 3'- uAUGGCACCCcCCGG---UCCGACCgUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 42680 | 0.67 | 0.540048 |
Target: 5'- -cGCgGUGGGcuGCCugAGGCUGGCAg- -3' miRNA: 3'- uaUGgCACCCccCGG--UCCGACCGUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 44392 | 0.67 | 0.530359 |
Target: 5'- -gGgCGUGuGGGGCCGGGCacGGCGc- -3' miRNA: 3'- uaUgGCACcCCCCGGUCCGa-CCGUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 44755 | 0.68 | 0.455535 |
Target: 5'- -gGCUGUGGuugucGGGGCCcGGCgGGCGg- -3' miRNA: 3'- uaUGGCACC-----CCCCGGuCCGaCCGUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 48332 | 0.66 | 0.569447 |
Target: 5'- -gGCgGUGGuGGGCCAGGCguccagucUGGCc-- -3' miRNA: 3'- uaUGgCACCcCCCGGUCCG--------ACCGuaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 48627 | 0.72 | 0.277587 |
Target: 5'- gGUGCCGUGGGGGcgggcuCCGGGCgGGUg-- -3' miRNA: 3'- -UAUGGCACCCCCc-----GGUCCGaCCGuaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 49657 | 0.68 | 0.489488 |
Target: 5'- -gACCGUcucgaacucgggcaGGGGGGCUAuGGC-GGCGUc -3' miRNA: 3'- uaUGGCA--------------CCCCCCGGU-CCGaCCGUAa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 51171 | 0.7 | 0.355065 |
Target: 5'- -cGCUGUGgguguggaaGGGGGUCugcGGGCUGGCGUg -3' miRNA: 3'- uaUGGCAC---------CCCCCGG---UCCGACCGUAa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 61393 | 0.67 | 0.501697 |
Target: 5'- -aGCUaUGGGGGuugucCCAGGCUGGCu-- -3' miRNA: 3'- uaUGGcACCCCCc----GGUCCGACCGuaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 67586 | 0.66 | 0.579338 |
Target: 5'- uUACUuUGGGGGGCCcguGGCguuUGGCc-- -3' miRNA: 3'- uAUGGcACCCCCCGGu--CCG---ACCGuaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 91773 | 0.68 | 0.464589 |
Target: 5'- gGUGCC-UGGGGuGCCGuGCUGGCAc- -3' miRNA: 3'- -UAUGGcACCCCcCGGUcCGACCGUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 92319 | 0.66 | 0.609205 |
Target: 5'- cUGCUGggGGGcGGGCCcGGCcuggGGCAg- -3' miRNA: 3'- uAUGGCa-CCC-CCCGGuCCGa---CCGUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 93899 | 0.69 | 0.394997 |
Target: 5'- uUugCGgcagGGGGGGCCAGcacGgaGGCGUa -3' miRNA: 3'- uAugGCa---CCCCCCGGUC---CgaCCGUAa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 95734 | 0.68 | 0.492293 |
Target: 5'- aAUGCCcaGUGGGGGG---GGCUGGUGUUg -3' miRNA: 3'- -UAUGG--CACCCCCCgguCCGACCGUAA- -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 98318 | 0.66 | 0.559597 |
Target: 5'- --uCCGUGGccgucuggcacGGGGCCGGGCgcGGCc-- -3' miRNA: 3'- uauGGCACC-----------CCCCGGUCCGa-CCGuaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 101668 | 0.68 | 0.473735 |
Target: 5'- -gGCCcUGGGGGGaaaCGGGCUacgGGCGg- -3' miRNA: 3'- uaUGGcACCCCCCg--GUCCGA---CCGUaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 125618 | 0.66 | 0.559597 |
Target: 5'- -cACCGagGGuGGGGCaUGGGCUGGUg-- -3' miRNA: 3'- uaUGGCa-CC-CCCCG-GUCCGACCGuaa -5' |
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29142 | 3' | -62.3 | NC_006146.1 | + | 126173 | 0.66 | 0.559597 |
Target: 5'- -aGCCaucaaGGGGGGCCaguGGGCaGGCAc- -3' miRNA: 3'- uaUGGca---CCCCCCGG---UCCGaCCGUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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