miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29142 3' -62.3 NC_006146.1 + 170190 0.68 0.492293
Target:  5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3'
miRNA:   3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 167395 0.68 0.492293
Target:  5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3'
miRNA:   3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 167493 0.66 0.599224
Target:  5'- uGUGCC-UGgcgggggagaGGGGGCaGGGCUGGCGc- -3'
miRNA:   3'- -UAUGGcAC----------CCCCCGgUCCGACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 42680 0.67 0.540048
Target:  5'- -cGCgGUGGGcuGCCugAGGCUGGCAg- -3'
miRNA:   3'- uaUGgCACCCccCGG--UCCGACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 153419 0.68 0.492293
Target:  5'- --cCCGgGGGcGGGUguGGCUGGCu-- -3'
miRNA:   3'- uauGGCaCCC-CCCGguCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 170288 0.66 0.599224
Target:  5'- uGUGCC-UGgcgggggagaGGGGGCaGGGCUGGCGc- -3'
miRNA:   3'- -UAUGGcAC----------CCCCCGgUCCGACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 4663 0.68 0.492293
Target:  5'- -cGCCGUccugggccGGGuGGGCgAGGCgggGGCAg- -3'
miRNA:   3'- uaUGGCA--------CCC-CCCGgUCCGa--CCGUaa -5'
29142 3' -62.3 NC_006146.1 + 49657 0.68 0.489488
Target:  5'- -gACCGUcucgaacucgggcaGGGGGGCUAuGGC-GGCGUc -3'
miRNA:   3'- uaUGGCA--------------CCCCCCGGU-CCGaCCGUAa -5'
29142 3' -62.3 NC_006146.1 + 168327 0.68 0.492293
Target:  5'- --cCCGagGGcGGGGCCGGGgcCUGGCGg- -3'
miRNA:   3'- uauGGCa-CC-CCCCGGUCC--GACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 141716 0.7 0.339908
Target:  5'- -aGCUGaGGGGGGCCGGGgaGGgAg- -3'
miRNA:   3'- uaUGGCaCCCCCCGGUCCgaCCgUaa -5'
29142 3' -62.3 NC_006146.1 + 156815 0.68 0.455535
Target:  5'- -gGCC-UGGGGuGGCCGGGgaGGgGUg -3'
miRNA:   3'- uaUGGcACCCC-CCGGUCCgaCCgUAa -5'
29142 3' -62.3 NC_006146.1 + 91773 0.68 0.464589
Target:  5'- gGUGCC-UGGGGuGCCGuGCUGGCAc- -3'
miRNA:   3'- -UAUGGcACCCCcCGGUcCGACCGUaa -5'
29142 3' -62.3 NC_006146.1 + 101668 0.68 0.473735
Target:  5'- -gGCCcUGGGGGGaaaCGGGCUacgGGCGg- -3'
miRNA:   3'- uaUGGcACCCCCCg--GUCCGA---CCGUaa -5'
29142 3' -62.3 NC_006146.1 + 154028 0.7 0.339908
Target:  5'- -aGCUGaGGGGGGCCGGGgaGGgAg- -3'
miRNA:   3'- uaUGGCaCCCCCCGGUCCgaCCgUaa -5'
29142 3' -62.3 NC_006146.1 + 156687 0.68 0.473735
Target:  5'- -gGgCGgcuGGGGGUCGGGCUGGCc-- -3'
miRNA:   3'- uaUgGCac-CCCCCGGUCCGACCGuaa -5'
29142 3' -62.3 NC_006146.1 + 150950 0.7 0.339908
Target:  5'- -aGCUGaGGGGGGCCGGGgaGGgAg- -3'
miRNA:   3'- uaUGGCaCCCCCCGGUCCgaCCgUaa -5'
29142 3' -62.3 NC_006146.1 + 147872 0.7 0.339908
Target:  5'- -aGCUGaGGGGGGCCGGGgaGGgAg- -3'
miRNA:   3'- uaUGGCaCCCCCCGGUCCgaCCgUaa -5'
29142 3' -62.3 NC_006146.1 + 144794 0.7 0.339908
Target:  5'- -aGCUGaGGGGGGCCGGGgaGGgAg- -3'
miRNA:   3'- uaUGGCaCCCCCCGGUCCgaCCgUaa -5'
29142 3' -62.3 NC_006146.1 + 95734 0.68 0.492293
Target:  5'- aAUGCCcaGUGGGGGG---GGCUGGUGUUg -3'
miRNA:   3'- -UAUGG--CACCCCCCgguCCGACCGUAA- -5'
29142 3' -62.3 NC_006146.1 + 162216 0.71 0.30341
Target:  5'- -aGgCGUGucacagaGGGGGCUAGGCUGGUGUa -3'
miRNA:   3'- uaUgGCAC-------CCCCCGGUCCGACCGUAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.