miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29142 5' -63.2 NC_006146.1 + 136703 0.66 0.674054
Target:  5'- gGCGGCGCgaggucccUGCCugGCccaGGGuCCggcUGGGGg -3'
miRNA:   3'- -CGUUGCG--------GCGGugCG---CCC-GGa--GCCCC- -5'
29142 5' -63.2 NC_006146.1 + 50146 0.66 0.674054
Target:  5'- -aGGCGCCGCCAgCGCucgucguccaGGaCCagGGGGg -3'
miRNA:   3'- cgUUGCGGCGGU-GCG----------CCcGGagCCCC- -5'
29142 5' -63.2 NC_006146.1 + 51739 0.66 0.674054
Target:  5'- gGCGGCGCC-CCGagGUGGGCUUCuugugcGGGc -3'
miRNA:   3'- -CGUUGCGGcGGUg-CGCCCGGAGc-----CCC- -5'
29142 5' -63.2 NC_006146.1 + 91684 0.66 0.674054
Target:  5'- cGCAugG-CGUCACGCGGGCUagaccugUGGcuGGa -3'
miRNA:   3'- -CGUugCgGCGGUGCGCCCGGa------GCC--CC- -5'
29142 5' -63.2 NC_006146.1 + 110280 0.66 0.674054
Target:  5'- aGCccCGuCUGCCAUGauGGCCUCGGc- -3'
miRNA:   3'- -CGuuGC-GGCGGUGCgcCCGGAGCCcc -5'
29142 5' -63.2 NC_006146.1 + 151649 0.66 0.663591
Target:  5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3'
miRNA:   3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5'
29142 5' -63.2 NC_006146.1 + 154726 0.66 0.663591
Target:  5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3'
miRNA:   3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5'
29142 5' -63.2 NC_006146.1 + 157804 0.66 0.663591
Target:  5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3'
miRNA:   3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5'
29142 5' -63.2 NC_006146.1 + 23356 0.66 0.663591
Target:  5'- uCAGCGCCuGgCGCGUggaaauaGGGUCUaGGGGa -3'
miRNA:   3'- cGUUGCGG-CgGUGCG-------CCCGGAgCCCC- -5'
29142 5' -63.2 NC_006146.1 + 142415 0.66 0.663591
Target:  5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3'
miRNA:   3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5'
29142 5' -63.2 NC_006146.1 + 145493 0.66 0.663591
Target:  5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3'
miRNA:   3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5'
29142 5' -63.2 NC_006146.1 + 148571 0.66 0.663591
Target:  5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3'
miRNA:   3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5'
29142 5' -63.2 NC_006146.1 + 157476 0.66 0.655009
Target:  5'- gGCAGCGUgaUGaCCGgGCGGGCCUUGc-- -3'
miRNA:   3'- -CGUUGCG--GC-GGUgCGCCCGGAGCccc -5'
29142 5' -63.2 NC_006146.1 + 158874 0.66 0.655009
Target:  5'- cGC-AC-CCGCCACGUagcugccGGUCUCGGGc -3'
miRNA:   3'- -CGuUGcGGCGGUGCGc------CCGGAGCCCc -5'
29142 5' -63.2 NC_006146.1 + 58427 0.66 0.655009
Target:  5'- -gAGCG-CGCCgGgGUGGGUCUgGGGGu -3'
miRNA:   3'- cgUUGCgGCGG-UgCGCCCGGAgCCCC- -5'
29142 5' -63.2 NC_006146.1 + 76371 0.66 0.655009
Target:  5'- ----aGaCCGCCACGagaGGGCgCgcCGGGGg -3'
miRNA:   3'- cguugC-GGCGGUGCg--CCCG-Ga-GCCCC- -5'
29142 5' -63.2 NC_006146.1 + 95358 0.66 0.655009
Target:  5'- uGCAugGCCGgguaagaCAa-CGGaGCCUCGGuGGg -3'
miRNA:   3'- -CGUugCGGCg------GUgcGCC-CGGAGCC-CC- -5'
29142 5' -63.2 NC_006146.1 + 116450 0.66 0.655009
Target:  5'- -gGACGCgGUU-CGCGaGGUCUCGGGc -3'
miRNA:   3'- cgUUGCGgCGGuGCGC-CCGGAGCCCc -5'
29142 5' -63.2 NC_006146.1 + 42708 0.66 0.655009
Target:  5'- cCGGCGCCGCgGCGCcccccuGGGCCgccuccCGGc- -3'
miRNA:   3'- cGUUGCGGCGgUGCG------CCCGGa-----GCCcc -5'
29142 5' -63.2 NC_006146.1 + 124452 0.66 0.651191
Target:  5'- cGCAuccggccuACGCCGCCGCcuuccuGgGGGCCcccucguucuacgCGGGa -3'
miRNA:   3'- -CGU--------UGCGGCGGUG------CgCCCGGa------------GCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.