Results 1 - 20 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29142 | 5' | -63.2 | NC_006146.1 | + | 110280 | 0.66 | 0.674054 |
Target: 5'- aGCccCGuCUGCCAUGauGGCCUCGGc- -3' miRNA: 3'- -CGuuGC-GGCGGUGCgcCCGGAGCCcc -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 51739 | 0.66 | 0.674054 |
Target: 5'- gGCGGCGCC-CCGagGUGGGCUUCuugugcGGGc -3' miRNA: 3'- -CGUUGCGGcGGUg-CGCCCGGAGc-----CCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 50146 | 0.66 | 0.674054 |
Target: 5'- -aGGCGCCGCCAgCGCucgucguccaGGaCCagGGGGg -3' miRNA: 3'- cgUUGCGGCGGU-GCG----------CCcGGagCCCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 91684 | 0.66 | 0.674054 |
Target: 5'- cGCAugG-CGUCACGCGGGCUagaccugUGGcuGGa -3' miRNA: 3'- -CGUugCgGCGGUGCGCCCGGa------GCC--CC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 136703 | 0.66 | 0.674054 |
Target: 5'- gGCGGCGCgaggucccUGCCugGCccaGGGuCCggcUGGGGg -3' miRNA: 3'- -CGUUGCG--------GCGGugCG---CCC-GGa--GCCCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 148571 | 0.66 | 0.663591 |
Target: 5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3' miRNA: 3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 157804 | 0.66 | 0.663591 |
Target: 5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3' miRNA: 3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 154726 | 0.66 | 0.663591 |
Target: 5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3' miRNA: 3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 23356 | 0.66 | 0.663591 |
Target: 5'- uCAGCGCCuGgCGCGUggaaauaGGGUCUaGGGGa -3' miRNA: 3'- cGUUGCGG-CgGUGCG-------CCCGGAgCCCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 142415 | 0.66 | 0.663591 |
Target: 5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3' miRNA: 3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 145493 | 0.66 | 0.663591 |
Target: 5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3' miRNA: 3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 151649 | 0.66 | 0.663591 |
Target: 5'- -gGACcCCGCCugGCgacccugGGGUCUgucUGGGGg -3' miRNA: 3'- cgUUGcGGCGGugCG-------CCCGGA---GCCCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 116450 | 0.66 | 0.655009 |
Target: 5'- -gGACGCgGUU-CGCGaGGUCUCGGGc -3' miRNA: 3'- cgUUGCGgCGGuGCGC-CCGGAGCCCc -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 42708 | 0.66 | 0.655009 |
Target: 5'- cCGGCGCCGCgGCGCcccccuGGGCCgccuccCGGc- -3' miRNA: 3'- cGUUGCGGCGgUGCG------CCCGGa-----GCCcc -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 95358 | 0.66 | 0.655009 |
Target: 5'- uGCAugGCCGgguaagaCAa-CGGaGCCUCGGuGGg -3' miRNA: 3'- -CGUugCGGCg------GUgcGCC-CGGAGCC-CC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 76371 | 0.66 | 0.655009 |
Target: 5'- ----aGaCCGCCACGagaGGGCgCgcCGGGGg -3' miRNA: 3'- cguugC-GGCGGUGCg--CCCG-Ga-GCCCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 157476 | 0.66 | 0.655009 |
Target: 5'- gGCAGCGUgaUGaCCGgGCGGGCCUUGc-- -3' miRNA: 3'- -CGUUGCG--GC-GGUgCGCCCGGAGCccc -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 158874 | 0.66 | 0.655009 |
Target: 5'- cGC-AC-CCGCCACGUagcugccGGUCUCGGGc -3' miRNA: 3'- -CGuUGcGGCGGUGCGc------CCGGAGCCCc -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 58427 | 0.66 | 0.655009 |
Target: 5'- -gAGCG-CGCCgGgGUGGGUCUgGGGGu -3' miRNA: 3'- cgUUGCgGCGG-UgCGCCCGGAgCCCC- -5' |
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29142 | 5' | -63.2 | NC_006146.1 | + | 124452 | 0.66 | 0.651191 |
Target: 5'- cGCAuccggccuACGCCGCCGCcuuccuGgGGGCCcccucguucuacgCGGGa -3' miRNA: 3'- -CGU--------UGCGGCGGUG------CgCCCGGa------------GCCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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