miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 5' -58.1 NC_006146.1 + 26850 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 23772 0.66 0.853995
Target:  5'- cUCCGCGugcgCAuaaUGGCGGCCCUgGAc- -3'
miRNA:   3'- cAGGUGCua--GU---ACUGCCGGGGgCUca -5'
29143 5' -58.1 NC_006146.1 + 66648 0.66 0.861531
Target:  5'- -cCCACGAUagc-AUGGCCUCUGGGUa -3'
miRNA:   3'- caGGUGCUAguacUGCCGGGGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 56113 0.66 0.861531
Target:  5'- cUCCACGAaggCgaagGUGgccGCGGgCCCCGAGa -3'
miRNA:   3'- cAGGUGCUa--G----UAC---UGCCgGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 51706 0.67 0.81101
Target:  5'- cGUCCuccguguCGGUgGUGgaggacauggggagGCGGCgCCCCGAGg -3'
miRNA:   3'- -CAGGu------GCUAgUAC--------------UGCCG-GGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 73042 0.66 0.861531
Target:  5'- uUCCACGGccCGgggucGGCGGCCCCCu--- -3'
miRNA:   3'- cAGGUGCUa-GUa----CUGCCGGGGGcuca -5'
29143 5' -58.1 NC_006146.1 + 143301 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 146379 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 152535 0.66 0.861531
Target:  5'- -cCCAUGA---UGugGGCCCUgGAGg -3'
miRNA:   3'- caGGUGCUaguACugCCGGGGgCUCa -5'
29143 5' -58.1 NC_006146.1 + 8779 0.66 0.838354
Target:  5'- -cCCACcGUgG-GACGGCCCCCcAGUg -3'
miRNA:   3'- caGGUGcUAgUaCUGCCGGGGGcUCA- -5'
29143 5' -58.1 NC_006146.1 + 165941 0.66 0.838354
Target:  5'- -gCCAgGAggcucUCGUGGCcccuGGUCCCCGGGg -3'
miRNA:   3'- caGGUgCU-----AGUACUG----CCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 41048 0.66 0.830262
Target:  5'- cGUCCGCGG-CGgcccUGGgGGCCUCgGGGUg -3'
miRNA:   3'- -CAGGUGCUaGU----ACUgCCGGGGgCUCA- -5'
29143 5' -58.1 NC_006146.1 + 61876 0.71 0.553609
Target:  5'- uUCCACGGg---GGCGcGCCCUCGGGUa -3'
miRNA:   3'- cAGGUGCUaguaCUGC-CGGGGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 61198 0.7 0.613015
Target:  5'- --aCACGGUCAUGGCGGagcucugCCCCGAu- -3'
miRNA:   3'- cagGUGCUAGUACUGCCg------GGGGCUca -5'
29143 5' -58.1 NC_006146.1 + 123295 0.77 0.286875
Target:  5'- aUCgGCGAUCccUGGCGGCCgCCGAGUg -3'
miRNA:   3'- cAGgUGCUAGu-ACUGCCGGgGGCUCA- -5'
29143 5' -58.1 NC_006146.1 + 130385 0.69 0.721982
Target:  5'- -cCCGgGAaaaCAcGugGGCCCCCGAGc -3'
miRNA:   3'- caGGUgCUa--GUaCugCCGGGGGCUCa -5'
29143 5' -58.1 NC_006146.1 + 114151 0.72 0.528365
Target:  5'- cUCCGCGAUCAggccccgGAcgucccgcgcgaauuCGGCCCCCuGAGa -3'
miRNA:   3'- cAGGUGCUAGUa------CU---------------GCCGGGGG-CUCa -5'
29143 5' -58.1 NC_006146.1 + 11508 0.68 0.76923
Target:  5'- -gUCAUGAUCGUGgacagcGCGGCCUgCGAGc -3'
miRNA:   3'- caGGUGCUAGUAC------UGCCGGGgGCUCa -5'
29143 5' -58.1 NC_006146.1 + 110837 0.67 0.821998
Target:  5'- cUCCACGGgaCGaGGCGGCgCCCGAu- -3'
miRNA:   3'- cAGGUGCUa-GUaCUGCCGgGGGCUca -5'
29143 5' -58.1 NC_006146.1 + 200 0.66 0.830262
Target:  5'- cUCUACGcgCcgGugcccccgcgACGGUCCCCGGGg -3'
miRNA:   3'- cAGGUGCuaGuaC----------UGCCGGGGGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.