miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 55768 0.67 0.957392
Target:  5'- gGCGGGCCAGGGgCaGCGAggccaccacgcUGGccagcgacucGGGGCg -3'
miRNA:   3'- -CGUUUGGUCUCgGaCGCU-----------AUC----------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 79295 0.67 0.957392
Target:  5'- -uGGGCCuAGAGCCUGCucUAGgccAGGGa -3'
miRNA:   3'- cgUUUGG-UCUCGGACGcuAUC---UCCCg -5'
29145 3' -53.2 NC_006146.1 + 96079 0.67 0.953072
Target:  5'- uGCAcACCaggauuaAGAGCCUGCG--GGAGcGCu -3'
miRNA:   3'- -CGUuUGG-------UCUCGGACGCuaUCUCcCG- -5'
29145 3' -53.2 NC_006146.1 + 149811 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 108522 0.67 0.949325
Target:  5'- cGCGAGCUgaacggccaGGGGCCUcuccggcgcgGCGuUGGAGuGGCu -3'
miRNA:   3'- -CGUUUGG---------UCUCGGA----------CGCuAUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 146733 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 155967 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 110574 0.67 0.960357
Target:  5'- cGCAAACCAGcGgUUGCGGUGGGucucgaccgucaGGCa -3'
miRNA:   3'- -CGUUUGGUCuCgGACGCUAUCUc-----------CCG- -5'
29145 3' -53.2 NC_006146.1 + 64158 0.67 0.960718
Target:  5'- -aGGGCCucGGAGUCUGCcaggcugGGUGG-GGGCa -3'
miRNA:   3'- cgUUUGG--UCUCGGACG-------CUAUCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 122567 0.67 0.962486
Target:  5'- cCAGACUGGAcGCCUggcccaccaccgccaGCaccuccgacGGUGGAGGGCg -3'
miRNA:   3'- cGUUUGGUCU-CGGA---------------CG---------CUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 161407 0.67 0.964533
Target:  5'- uGCAGAUCAuaGGCCUGUGccAGGcGGGUg -3'
miRNA:   3'- -CGUUUGGUc-UCGGACGCuaUCU-CCCG- -5'
29145 3' -53.2 NC_006146.1 + 143656 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 47046 0.67 0.957392
Target:  5'- uGCGAGaaGGGGCCggucgccggUGuCGGUgAGGGGGCg -3'
miRNA:   3'- -CGUUUggUCUCGG---------AC-GCUA-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 54716 0.67 0.957392
Target:  5'- gGCGGGCCcGGGUCaggGCGGccGAGGGg -3'
miRNA:   3'- -CGUUUGGuCUCGGa--CGCUauCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 51644 0.67 0.960357
Target:  5'- gGUGAcuACCGGAGCagggagGCGAguaagaacugaaGGGGGGCg -3'
miRNA:   3'- -CGUU--UGGUCUCGga----CGCUa-----------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 160682 0.67 0.961076
Target:  5'- gGCAcauGACCAGGGCC---GGUAGAGG-Ca -3'
miRNA:   3'- -CGU---UUGGUCUCGGacgCUAUCUCCcG- -5'
29145 3' -53.2 NC_006146.1 + 49291 0.67 0.953476
Target:  5'- cCAGGCaGGAGUCUuccGCGAUgacgagcugugAGGGGGCu -3'
miRNA:   3'- cGUUUGgUCUCGGA---CGCUA-----------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 143707 0.68 0.935426
Target:  5'- aGUuAGCCuGGGGCCU-CGGagggccUGGAGGGCu -3'
miRNA:   3'- -CGuUUGG-UCUCGGAcGCU------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 165780 0.68 0.923277
Target:  5'- aGCGAucaAUCAGAGCCa-CGGUggcacggccggcuaGGGGGGCg -3'
miRNA:   3'- -CGUU---UGGUCUCGGacGCUA--------------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 15966 0.68 0.918745
Target:  5'- aCAGACCuGGgggcguucccugcGCCUGCGA---AGGGCg -3'
miRNA:   3'- cGUUUGGuCU-------------CGGACGCUaucUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.