Results 81 - 100 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 147628 | 0.68 | 0.940303 |
Target: 5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3' miRNA: 3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 141472 | 0.68 | 0.940303 |
Target: 5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3' miRNA: 3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 165780 | 0.68 | 0.923277 |
Target: 5'- aGCGAucaAUCAGAGCCa-CGGUggcacggccggcuaGGGGGGCg -3' miRNA: 3'- -CGUU---UGGUCUCGGacGCUA--------------UCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 4663 | 0.68 | 0.924936 |
Target: 5'- cGCcguCCuGGGCCggguggGCGAggcGGGGGCa -3' miRNA: 3'- -CGuuuGGuCUCGGa-----CGCUau-CUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 15966 | 0.68 | 0.918745 |
Target: 5'- aCAGACCuGGgggcguucccugcGCCUGCGA---AGGGCg -3' miRNA: 3'- cGUUUGGuCU-------------CGGACGCUaucUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 89013 | 0.68 | 0.930304 |
Target: 5'- --uGGCaCGGAGCCUGCcGUGGAuguuGGGUc -3' miRNA: 3'- cguUUG-GUCUCGGACGcUAUCU----CCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 104673 | 0.68 | 0.924936 |
Target: 5'- ---uGCCuGcGCC-GCGAUAGAGGGg -3' miRNA: 3'- cguuUGGuCuCGGaCGCUAUCUCCCg -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 129856 | 0.68 | 0.944935 |
Target: 5'- gGCcc-CCAGGGCCgccGCGGacgGGGGGGa -3' miRNA: 3'- -CGuuuGGUCUCGGa--CGCUa--UCUCCCg -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 144550 | 0.68 | 0.940303 |
Target: 5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3' miRNA: 3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 24226 | 0.68 | 0.940303 |
Target: 5'- -gGGGCCGGGGCCgcccaccGCccgGGAGGGUu -3' miRNA: 3'- cgUUUGGUCUCGGa------CGcuaUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 11537 | 0.68 | 0.944935 |
Target: 5'- uGUAGGCCuuGGCCaaucaGCGGUcccuaaGGGGGGCu -3' miRNA: 3'- -CGUUUGGucUCGGa----CGCUA------UCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 10508 | 0.68 | 0.940303 |
Target: 5'- cGCAGGCUcuGGUUUGCGAgacuGGGCg -3' miRNA: 3'- -CGUUUGGucUCGGACGCUaucuCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 9376 | 0.68 | 0.935426 |
Target: 5'- gGCAGcuGCCAGGGUUUGU---GGAGGuGCa -3' miRNA: 3'- -CGUU--UGGUCUCGGACGcuaUCUCC-CG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 143707 | 0.68 | 0.935426 |
Target: 5'- aGUuAGCCuGGGGCCU-CGGagggccUGGAGGGCu -3' miRNA: 3'- -CGuUUGG-UCUCGGAcGCU------AUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 47967 | 0.68 | 0.924936 |
Target: 5'- uGCGAuuucuuugGCCAGAGCgUGgGGUcAGAGguGGCu -3' miRNA: 3'- -CGUU--------UGGUCUCGgACgCUA-UCUC--CCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 44002 | 0.68 | 0.935426 |
Target: 5'- aGUAGGCCGGAGgUggaUGUGG-GGAGGGUc -3' miRNA: 3'- -CGUUUGGUCUCgG---ACGCUaUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 55047 | 0.68 | 0.924936 |
Target: 5'- -gGGGCCGGGGCCUGCcacAGGcGGCc -3' miRNA: 3'- cgUUUGGUCUCGGACGcuaUCUcCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 153511 | 0.68 | 0.935427 |
Target: 5'- uGCuu-CUGGAGgCUGUGGauggagUGGGGGGCg -3' miRNA: 3'- -CGuuuGGUCUCgGACGCU------AUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 170523 | 0.68 | 0.940303 |
Target: 5'- gGCGGGC-GGGGCCUG----AGGGGGCg -3' miRNA: 3'- -CGUUUGgUCUCGGACgcuaUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 139038 | 0.68 | 0.944935 |
Target: 5'- cGCAucCCAGGGgCggaaGCGuggacccAGAGGGCg -3' miRNA: 3'- -CGUuuGGUCUCgGa---CGCua-----UCUCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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