Results 101 - 120 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 103376 | 0.68 | 0.924936 |
Target: 5'- aCGAGCguGGgggagauagggcGCCUGCcaGUGGGGGGCg -3' miRNA: 3'- cGUUUGguCU------------CGGACGc-UAUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 23887 | 0.68 | 0.929778 |
Target: 5'- uCAAACUaacgaggAGGGaa-GCGAUGGGGGGCg -3' miRNA: 3'- cGUUUGG-------UCUCggaCGCUAUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 102579 | 0.68 | 0.935427 |
Target: 5'- cCGAGCC-GAGCgUGCaGGUcGGGGGGUc -3' miRNA: 3'- cGUUUGGuCUCGgACG-CUA-UCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 149442 | 0.68 | 0.940303 |
Target: 5'- uGUAGGCCgAGAGCUUGCGGcucagcuccgUGGAGaaGCa -3' miRNA: 3'- -CGUUUGG-UCUCGGACGCU----------AUCUCc-CG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 55047 | 0.68 | 0.924936 |
Target: 5'- -gGGGCCGGGGCCUGCcacAGGcGGCc -3' miRNA: 3'- cgUUUGGUCUCGGACGcuaUCUcCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 120569 | 0.68 | 0.944935 |
Target: 5'- -aAAACCAGAGCCUGgucaGAgAGAacaGGaGCg -3' miRNA: 3'- cgUUUGGUCUCGGACg---CUaUCU---CC-CG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 9376 | 0.68 | 0.935426 |
Target: 5'- gGCAGcuGCCAGGGUUUGU---GGAGGuGCa -3' miRNA: 3'- -CGUU--UGGUCUCGGACGcuaUCUCC-CG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 143707 | 0.68 | 0.935426 |
Target: 5'- aGUuAGCCuGGGGCCU-CGGagggccUGGAGGGCu -3' miRNA: 3'- -CGuUUGG-UCUCGGAcGCU------AUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 44002 | 0.68 | 0.935426 |
Target: 5'- aGUAGGCCGGAGgUggaUGUGG-GGAGGGUc -3' miRNA: 3'- -CGUUUGGUCUCgG---ACGCUaUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 89013 | 0.68 | 0.930304 |
Target: 5'- --uGGCaCGGAGCCUGCcGUGGAuguuGGGUc -3' miRNA: 3'- cguUUG-GUCUCGGACGcUAUCU----CCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 47670 | 0.69 | 0.887593 |
Target: 5'- cGCGgcGGCCAGGGUCUcGUGgAUGGAggacuuGGGCg -3' miRNA: 3'- -CGU--UUGGUCUCGGA-CGC-UAUCU------CCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 15285 | 0.69 | 0.901006 |
Target: 5'- gGCuGAACCGGAGCgaGgGGgaGGAGGGg -3' miRNA: 3'- -CG-UUUGGUCUCGgaCgCUa-UCUCCCg -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 49054 | 0.69 | 0.907354 |
Target: 5'- cGCGAGCguaGGGGgCUGgauCGAaGGAGGGCu -3' miRNA: 3'- -CGUUUGg--UCUCgGAC---GCUaUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 14194 | 0.69 | 0.907354 |
Target: 5'- ----cCCGGAGCCUG-GAcGGGGaGGCg -3' miRNA: 3'- cguuuGGUCUCGGACgCUaUCUC-CCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 134574 | 0.69 | 0.886898 |
Target: 5'- aGCAGGCU-GAGCUgugcaguuuugauUGUGGggGGAGGGCu -3' miRNA: 3'- -CGUUUGGuCUCGG-------------ACGCUa-UCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 64221 | 0.69 | 0.91286 |
Target: 5'- gGCAGgaggcacaucugcGCCuGGGCCgggGCGggAG-GGGCg -3' miRNA: 3'- -CGUU-------------UGGuCUCGGa--CGCuaUCuCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 92821 | 0.69 | 0.894417 |
Target: 5'- gGCAAA--GGGGgCUGCGGUaccAGGGGGUa -3' miRNA: 3'- -CGUUUggUCUCgGACGCUA---UCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 169021 | 0.69 | 0.887593 |
Target: 5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3' miRNA: 3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 169953 | 0.69 | 0.887593 |
Target: 5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3' miRNA: 3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 167157 | 0.69 | 0.887593 |
Target: 5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3' miRNA: 3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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