miRNA display CGI


Results 121 - 140 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 55656 0.69 0.907354
Target:  5'- uGCAgcAGCCGGAGCCagGCGGcguuGAaggccagcacGGGCa -3'
miRNA:   3'- -CGU--UUGGUCUCGGa-CGCUau--CU----------CCCG- -5'
29145 3' -53.2 NC_006146.1 + 47670 0.69 0.887593
Target:  5'- cGCGgcGGCCAGGGUCUcGUGgAUGGAggacuuGGGCg -3'
miRNA:   3'- -CGU--UUGGUCUCGGA-CGC-UAUCU------CCCG- -5'
29145 3' -53.2 NC_006146.1 + 20575 0.69 0.894417
Target:  5'- aCAGACUAGccGGCCUGCGccc--GGGCg -3'
miRNA:   3'- cGUUUGGUC--UCGGACGCuaucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 65039 0.69 0.894417
Target:  5'- ----cCCAGGGCCcacUGCGA-GGAGcGGCa -3'
miRNA:   3'- cguuuGGUCUCGG---ACGCUaUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 139578 0.69 0.894417
Target:  5'- uGUAAGCCcaauGAGgCUGCG---GGGGGCg -3'
miRNA:   3'- -CGUUUGGu---CUCgGACGCuauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 15285 0.69 0.901006
Target:  5'- gGCuGAACCGGAGCgaGgGGgaGGAGGGg -3'
miRNA:   3'- -CG-UUUGGUCUCGgaCgCUa-UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 92821 0.69 0.894417
Target:  5'- gGCAAA--GGGGgCUGCGGUaccAGGGGGUa -3'
miRNA:   3'- -CGUUUggUCUCgGACGCUA---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 49054 0.69 0.907354
Target:  5'- cGCGAGCguaGGGGgCUGgauCGAaGGAGGGCu -3'
miRNA:   3'- -CGUUUGg--UCUCgGAC---GCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 14194 0.69 0.907354
Target:  5'- ----cCCGGAGCCUG-GAcGGGGaGGCg -3'
miRNA:   3'- cguuuGGUCUCGGACgCUaUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 108684 0.69 0.907354
Target:  5'- uGCGc-CCAGAGgCUGCGGcgcAGGGCu -3'
miRNA:   3'- -CGUuuGGUCUCgGACGCUaucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 64221 0.69 0.91286
Target:  5'- gGCAGgaggcacaucugcGCCuGGGCCgggGCGggAG-GGGCg -3'
miRNA:   3'- -CGUU-------------UGGuCUCGGa--CGCuaUCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 60464 0.69 0.913459
Target:  5'- gGCAGGCCgcggGGAGCg-GUGAgaggccGGGGGGCc -3'
miRNA:   3'- -CGUUUGG----UCUCGgaCGCUa-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 131835 0.69 0.913459
Target:  5'- cCAGACCGGAgGCCgGCGAccauucacAGGGCc -3'
miRNA:   3'- cGUUUGGUCU-CGGaCGCUauc-----UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 64415 0.69 0.909826
Target:  5'- uGUAGGCCGGGGCCacgGCGGcgUacgcugccaggagacAGAGGGg -3'
miRNA:   3'- -CGUUUGGUCUCGGa--CGCU--A---------------UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 134574 0.69 0.886898
Target:  5'- aGCAGGCU-GAGCUgugcaguuuugauUGUGGggGGAGGGCu -3'
miRNA:   3'- -CGUUUGGuCUCGG-------------ACGCUa-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 122108 0.7 0.879818
Target:  5'- gGCGgaGACCGGGGCCUucgugaaGCuGGUGGAGacGGCc -3'
miRNA:   3'- -CGU--UUGGUCUCGGA-------CG-CUAUCUC--CCG- -5'
29145 3' -53.2 NC_006146.1 + 119945 0.7 0.850084
Target:  5'- cGCugcuGCCGGAgGUCU-CGGUGGGGGGUc -3'
miRNA:   3'- -CGuu--UGGUCU-CGGAcGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 137975 0.7 0.850084
Target:  5'- cCGGGCCucccgGGGGCCcgGCGGggUGGGGGGUg -3'
miRNA:   3'- cGUUUGG-----UCUCGGa-CGCU--AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 68376 0.7 0.865744
Target:  5'- gGC-AACCAGGGCCU-UGAUGacgacGGGGGUg -3'
miRNA:   3'- -CGuUUGGUCUCGGAcGCUAU-----CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 91696 0.7 0.873251
Target:  5'- cGCGGGCUAGA-CCUGUGGcUGGAGGa- -3'
miRNA:   3'- -CGUUUGGUCUcGGACGCU-AUCUCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.