Results 141 - 160 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 168145 | 0.7 | 0.880536 |
Target: 5'- cCGGGCUuGGGCCUGCGAgGGccGGGUa -3' miRNA: 3'- cGUUUGGuCUCGGACGCUaUCu-CCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 151587 | 0.7 | 0.850084 |
Target: 5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3' miRNA: 3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 68376 | 0.7 | 0.865744 |
Target: 5'- gGC-AACCAGGGCCU-UGAUGacgacGGGGGUg -3' miRNA: 3'- -CGuUUGGUCUCGGAcGCUAU-----CUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 137975 | 0.7 | 0.850084 |
Target: 5'- cCGGGCCucccgGGGGCCcgGCGGggUGGGGGGUg -3' miRNA: 3'- cGUUUGG-----UCUCGGa-CGCU--AUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 65551 | 0.7 | 0.849279 |
Target: 5'- aGCAAcUCAGAGCCU-CGGUagaaaagAGAGcGGCg -3' miRNA: 3'- -CGUUuGGUCUCGGAcGCUA-------UCUC-CCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 45026 | 0.7 | 0.850084 |
Target: 5'- uGUuuACCAGAagGCCUuCGA-GGAGGGCc -3' miRNA: 3'- -CGuuUGGUCU--CGGAcGCUaUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 142353 | 0.7 | 0.850084 |
Target: 5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3' miRNA: 3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 145431 | 0.7 | 0.850084 |
Target: 5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3' miRNA: 3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 148509 | 0.7 | 0.850084 |
Target: 5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3' miRNA: 3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 157742 | 0.7 | 0.850084 |
Target: 5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3' miRNA: 3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 146786 | 0.7 | 0.858019 |
Target: 5'- uUAGGCCuGGGGCCU-CGGagggccUGGAGGGCu -3' miRNA: 3'- cGUUUGG-UCUCGGAcGCU------AUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 149864 | 0.7 | 0.858019 |
Target: 5'- uUAGGCCuGGGGCCU-CGGagggccUGGAGGGCu -3' miRNA: 3'- cGUUUGG-UCUCGGAcGCU------AUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 152942 | 0.7 | 0.858019 |
Target: 5'- uUAGGCCuGGGGCCU-CGGagggccUGGAGGGCu -3' miRNA: 3'- cGUUUGG-UCUCGGAcGCU------AUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 156020 | 0.7 | 0.858019 |
Target: 5'- uUAGGCCuGGGGCCU-CGGagggccUGGAGGGCu -3' miRNA: 3'- cGUUUGG-UCUCGGAcGCU------AUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 50710 | 0.7 | 0.858019 |
Target: 5'- gGCAGGCCuGAaaGCCgGCGuugagcGGGGGCg -3' miRNA: 3'- -CGUUUGGuCU--CGGaCGCuau---CUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 45532 | 0.7 | 0.865743 |
Target: 5'- uGCAcaagaacguGACCAGGGCCagGCaggGGAGGGa -3' miRNA: 3'- -CGU---------UUGGUCUCGGa-CGcuaUCUCCCg -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 52073 | 0.7 | 0.850084 |
Target: 5'- aGCAuGACgGGAgGgCUGCGGUcGGGGGCc -3' miRNA: 3'- -CGU-UUGgUCU-CgGACGCUAuCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 49004 | 0.7 | 0.850084 |
Target: 5'- uGCAGACCggcuaGGAGCCgcaggGCGuucuccGGGGCg -3' miRNA: 3'- -CGUUUGG-----UCUCGGa----CGCuauc--UCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 12297 | 0.7 | 0.865743 |
Target: 5'- aGCuGAACCAGAaCCUGC--UGGAGcGGCu -3' miRNA: 3'- -CG-UUUGGUCUcGGACGcuAUCUC-CCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 119945 | 0.7 | 0.850084 |
Target: 5'- cGCugcuGCCGGAgGUCU-CGGUGGGGGGUc -3' miRNA: 3'- -CGuu--UGGUCU-CGGAcGCUAUCUCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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