miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 156020 0.7 0.858019
Target:  5'- uUAGGCCuGGGGCCU-CGGagggccUGGAGGGCu -3'
miRNA:   3'- cGUUUGG-UCUCGGAcGCU------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 152942 0.7 0.858019
Target:  5'- uUAGGCCuGGGGCCU-CGGagggccUGGAGGGCu -3'
miRNA:   3'- cGUUUGG-UCUCGGAcGCU------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 149864 0.7 0.858019
Target:  5'- uUAGGCCuGGGGCCU-CGGagggccUGGAGGGCu -3'
miRNA:   3'- cGUUUGG-UCUCGGAcGCU------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 146786 0.7 0.858019
Target:  5'- uUAGGCCuGGGGCCU-CGGagggccUGGAGGGCu -3'
miRNA:   3'- cGUUUGG-UCUCGGAcGCU------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 157742 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 44111 0.7 0.873251
Target:  5'- cCAGGCCccGGCUgcccgGCGAggagGGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGa----CGCUa---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 168145 0.7 0.880536
Target:  5'- cCGGGCUuGGGCCUGCGAgGGccGGGUa -3'
miRNA:   3'- cGUUUGGuCUCGGACGCUaUCu-CCCG- -5'
29145 3' -53.2 NC_006146.1 + 52073 0.7 0.850084
Target:  5'- aGCAuGACgGGAgGgCUGCGGUcGGGGGCc -3'
miRNA:   3'- -CGU-UUGgUCU-CgGACGCUAuCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 142353 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 145431 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 65551 0.7 0.849279
Target:  5'- aGCAAcUCAGAGCCU-CGGUagaaaagAGAGcGGCg -3'
miRNA:   3'- -CGUUuGGUCUCGGAcGCUA-------UCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 49004 0.7 0.850084
Target:  5'- uGCAGACCggcuaGGAGCCgcaggGCGuucuccGGGGCg -3'
miRNA:   3'- -CGUUUGG-----UCUCGGa----CGCuauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 66918 0.7 0.850084
Target:  5'- uGCAGACCgGGAGCCUGgGAUuGAaguacucgugccGGGa -3'
miRNA:   3'- -CGUUUGG-UCUCGGACgCUAuCU------------CCCg -5'
29145 3' -53.2 NC_006146.1 + 119945 0.7 0.850084
Target:  5'- cGCugcuGCCGGAgGUCU-CGGUGGGGGGUc -3'
miRNA:   3'- -CGuu--UGGUCU-CGGAcGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 68376 0.7 0.865744
Target:  5'- gGC-AACCAGGGCCU-UGAUGacgacGGGGGUg -3'
miRNA:   3'- -CGuUUGGUCUCGGAcGCUAU-----CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 91696 0.7 0.873251
Target:  5'- cGCGGGCUAGA-CCUGUGGcUGGAGGa- -3'
miRNA:   3'- -CGUUUGGUCUcGGACGCU-AUCUCCcg -5'
29145 3' -53.2 NC_006146.1 + 122108 0.7 0.879818
Target:  5'- gGCGgaGACCGGGGCCUucgugaaGCuGGUGGAGacGGCc -3'
miRNA:   3'- -CGU--UUGGUCUCGGA-------CG-CUAUCUC--CCG- -5'
29145 3' -53.2 NC_006146.1 + 137975 0.7 0.850084
Target:  5'- cCGGGCCucccgGGGGCCcgGCGGggUGGGGGGUg -3'
miRNA:   3'- cGUUUGG-----UCUCGGa-CGCU--AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 148509 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 151587 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.