miRNA display CGI


Results 121 - 140 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 10508 0.68 0.940303
Target:  5'- cGCAGGCUcuGGUUUGCGAgacuGGGCg -3'
miRNA:   3'- -CGUUUGGucUCGGACGCUaucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 115651 0.68 0.944935
Target:  5'- cGCuucGCCcGGGCCgcccggGCGAcguaccuGAGGGCg -3'
miRNA:   3'- -CGuu-UGGuCUCGGa-----CGCUau-----CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 117977 0.68 0.944935
Target:  5'- gGCGGACgAG-GCCaGCGcccccGGGGGGCc -3'
miRNA:   3'- -CGUUUGgUCuCGGaCGCua---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 40018 0.68 0.944935
Target:  5'- gGCGuAGCagGGGGCCUGCu---GGGGGCc -3'
miRNA:   3'- -CGU-UUGg-UCUCGGACGcuauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 156861 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 150705 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 147628 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 144550 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 141472 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 102579 0.68 0.935427
Target:  5'- cCGAGCC-GAGCgUGCaGGUcGGGGGGUc -3'
miRNA:   3'- cGUUUGGuCUCGgACG-CUA-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 153511 0.68 0.935427
Target:  5'- uGCuu-CUGGAGgCUGUGGauggagUGGGGGGCg -3'
miRNA:   3'- -CGuuuGGUCUCgGACGCU------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 9376 0.68 0.935426
Target:  5'- gGCAGcuGCCAGGGUUUGU---GGAGGuGCa -3'
miRNA:   3'- -CGUU--UGGUCUCGGACGcuaUCUCC-CG- -5'
29145 3' -53.2 NC_006146.1 + 170523 0.68 0.940303
Target:  5'- gGCGGGC-GGGGCCUG----AGGGGGCg -3'
miRNA:   3'- -CGUUUGgUCUCGGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 129856 0.68 0.944935
Target:  5'- gGCcc-CCAGGGCCgccGCGGacgGGGGGGa -3'
miRNA:   3'- -CGuuuGGUCUCGGa--CGCUa--UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 139038 0.68 0.944935
Target:  5'- cGCAucCCAGGGgCggaaGCGuggacccAGAGGGCg -3'
miRNA:   3'- -CGUuuGGUCUCgGa---CGCua-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 11537 0.68 0.944935
Target:  5'- uGUAGGCCuuGGCCaaucaGCGGUcccuaaGGGGGGCu -3'
miRNA:   3'- -CGUUUGGucUCGGa----CGCUA------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 120569 0.68 0.944935
Target:  5'- -aAAACCAGAGCCUGgucaGAgAGAacaGGaGCg -3'
miRNA:   3'- cgUUUGGUCUCGGACg---CUaUCU---CC-CG- -5'
29145 3' -53.2 NC_006146.1 + 55047 0.68 0.924936
Target:  5'- -gGGGCCGGGGCCUGCcacAGGcGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGACGcuaUCUcCCG- -5'
29145 3' -53.2 NC_006146.1 + 24226 0.68 0.940303
Target:  5'- -gGGGCCGGGGCCgcccaccGCccgGGAGGGUu -3'
miRNA:   3'- cgUUUGGUCUCGGa------CGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 149811 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.