miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 147179 0.7 0.880536
Target:  5'- cGCAGACCGGcGCCccuucgcccggUGCGcagaGGAGGGg -3'
miRNA:   3'- -CGUUUGGUCuCGG-----------ACGCua--UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 134574 0.69 0.886898
Target:  5'- aGCAGGCU-GAGCUgugcaguuuugauUGUGGggGGAGGGCu -3'
miRNA:   3'- -CGUUUGGuCUCGG-------------ACGCUa-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 99058 0.69 0.887593
Target:  5'- gGCGggUgucggCGGuGCCguaGUGGUGGAGGGCc -3'
miRNA:   3'- -CGUuuG-----GUCuCGGa--CGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 167157 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 169953 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 47670 0.69 0.887593
Target:  5'- cGCGgcGGCCAGGGUCUcGUGgAUGGAggacuuGGGCg -3'
miRNA:   3'- -CGU--UUGGUCUCGGA-CGC-UAUCU------CCCG- -5'
29145 3' -53.2 NC_006146.1 + 168089 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 169021 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 20575 0.69 0.894417
Target:  5'- aCAGACUAGccGGCCUGCGccc--GGGCg -3'
miRNA:   3'- cGUUUGGUC--UCGGACGCuaucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 65039 0.69 0.894417
Target:  5'- ----cCCAGGGCCcacUGCGA-GGAGcGGCa -3'
miRNA:   3'- cguuuGGUCUCGG---ACGCUaUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 139578 0.69 0.894417
Target:  5'- uGUAAGCCcaauGAGgCUGCG---GGGGGCg -3'
miRNA:   3'- -CGUUUGGu---CUCgGACGCuauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 92821 0.69 0.894417
Target:  5'- gGCAAA--GGGGgCUGCGGUaccAGGGGGUa -3'
miRNA:   3'- -CGUUUggUCUCgGACGCUA---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 47145 0.69 0.894418
Target:  5'- gGCGuAGCgCAcGAGCCUGUcccuGA-GGAGGGCa -3'
miRNA:   3'- -CGU-UUG-GU-CUCGGACG----CUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 43435 0.69 0.894418
Target:  5'- cGUccAUCAGuAGCCUGCGGgccgccacaucUGGAGcGGCa -3'
miRNA:   3'- -CGuuUGGUC-UCGGACGCU-----------AUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 155157 0.69 0.894418
Target:  5'- aGCGGGCCAGGGCCa-CGuugcuGGGCg -3'
miRNA:   3'- -CGUUUGGUCUCGGacGCuaucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 15285 0.69 0.901006
Target:  5'- gGCuGAACCGGAGCgaGgGGgaGGAGGGg -3'
miRNA:   3'- -CG-UUUGGUCUCGgaCgCUa-UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 128170 0.69 0.901006
Target:  5'- gGCGAugCAGcgacGCCgggagGCGGcccaGGGGGGCg -3'
miRNA:   3'- -CGUUugGUCu---CGGa----CGCUa---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 60700 0.69 0.905475
Target:  5'- ---uGCCGGAGaagauccugguguuCCUGCuGAUuGAGGGCa -3'
miRNA:   3'- cguuUGGUCUC--------------GGACG-CUAuCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 49054 0.69 0.907354
Target:  5'- cGCGAGCguaGGGGgCUGgauCGAaGGAGGGCu -3'
miRNA:   3'- -CGUUUGg--UCUCgGAC---GCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 14194 0.69 0.907354
Target:  5'- ----cCCGGAGCCUG-GAcGGGGaGGCg -3'
miRNA:   3'- cguuuGGUCUCGGACgCUaUCUC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.