miRNA display CGI


Results 101 - 120 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 23887 0.68 0.929778
Target:  5'- uCAAACUaacgaggAGGGaa-GCGAUGGGGGGCg -3'
miRNA:   3'- cGUUUGG-------UCUCggaCGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 55047 0.68 0.924936
Target:  5'- -gGGGCCGGGGCCUGCcacAGGcGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGACGcuaUCUcCCG- -5'
29145 3' -53.2 NC_006146.1 + 103376 0.68 0.924936
Target:  5'- aCGAGCguGGgggagauagggcGCCUGCcaGUGGGGGGCg -3'
miRNA:   3'- cGUUUGguCU------------CGGACGc-UAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 104673 0.68 0.924936
Target:  5'- ---uGCCuGcGCC-GCGAUAGAGGGg -3'
miRNA:   3'- cguuUGGuCuCGGaCGCUAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 47967 0.68 0.924936
Target:  5'- uGCGAuuucuuugGCCAGAGCgUGgGGUcAGAGguGGCu -3'
miRNA:   3'- -CGUU--------UGGUCUCGgACgCUA-UCUC--CCG- -5'
29145 3' -53.2 NC_006146.1 + 4663 0.68 0.924936
Target:  5'- cGCcguCCuGGGCCggguggGCGAggcGGGGGCa -3'
miRNA:   3'- -CGuuuGGuCUCGGa-----CGCUau-CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 45045 0.68 0.924936
Target:  5'- -gAGGCCGGGGCCgGCucccUAG-GGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGaCGcu--AUCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 165780 0.68 0.923277
Target:  5'- aGCGAucaAUCAGAGCCa-CGGUggcacggccggcuaGGGGGGCg -3'
miRNA:   3'- -CGUU---UGGUCUCGGacGCUA--------------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 41355 0.68 0.919321
Target:  5'- ----cCCAGGGCCUgGCGGUGGu-GGCc -3'
miRNA:   3'- cguuuGGUCUCGGA-CGCUAUCucCCG- -5'
29145 3' -53.2 NC_006146.1 + 15966 0.68 0.918745
Target:  5'- aCAGACCuGGgggcguucccugcGCCUGCGA---AGGGCg -3'
miRNA:   3'- cGUUUGGuCU-------------CGGACGCUaucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 131835 0.69 0.913459
Target:  5'- cCAGACCGGAgGCCgGCGAccauucacAGGGCc -3'
miRNA:   3'- cGUUUGGUCU-CGGaCGCUauc-----UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 60464 0.69 0.913459
Target:  5'- gGCAGGCCgcggGGAGCg-GUGAgaggccGGGGGGCc -3'
miRNA:   3'- -CGUUUGG----UCUCGgaCGCUa-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 64221 0.69 0.91286
Target:  5'- gGCAGgaggcacaucugcGCCuGGGCCgggGCGggAG-GGGCg -3'
miRNA:   3'- -CGUU-------------UGGuCUCGGa--CGCuaUCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 64415 0.69 0.909826
Target:  5'- uGUAGGCCGGGGCCacgGCGGcgUacgcugccaggagacAGAGGGg -3'
miRNA:   3'- -CGUUUGGUCUCGGa--CGCU--A---------------UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 14194 0.69 0.907354
Target:  5'- ----cCCGGAGCCUG-GAcGGGGaGGCg -3'
miRNA:   3'- cguuuGGUCUCGGACgCUaUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 108684 0.69 0.907354
Target:  5'- uGCGc-CCAGAGgCUGCGGcgcAGGGCu -3'
miRNA:   3'- -CGUuuGGUCUCgGACGCUaucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 55656 0.69 0.907354
Target:  5'- uGCAgcAGCCGGAGCCagGCGGcguuGAaggccagcacGGGCa -3'
miRNA:   3'- -CGU--UUGGUCUCGGa-CGCUau--CU----------CCCG- -5'
29145 3' -53.2 NC_006146.1 + 49054 0.69 0.907354
Target:  5'- cGCGAGCguaGGGGgCUGgauCGAaGGAGGGCu -3'
miRNA:   3'- -CGUUUGg--UCUCgGAC---GCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 60700 0.69 0.905475
Target:  5'- ---uGCCGGAGaagauccugguguuCCUGCuGAUuGAGGGCa -3'
miRNA:   3'- cguuUGGUCUC--------------GGACG-CUAuCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 128170 0.69 0.901006
Target:  5'- gGCGAugCAGcgacGCCgggagGCGGcccaGGGGGGCg -3'
miRNA:   3'- -CGUUugGUCu---CGGa----CGCUa---UCUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.