Results 121 - 140 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29145 | 3' | -53.2 | NC_006146.1 | + | 128170 | 0.69 | 0.901006 |
Target: 5'- gGCGAugCAGcgacGCCgggagGCGGcccaGGGGGGCg -3' miRNA: 3'- -CGUUugGUCu---CGGa----CGCUa---UCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 155157 | 0.69 | 0.894418 |
Target: 5'- aGCGGGCCAGGGCCa-CGuugcuGGGCg -3' miRNA: 3'- -CGUUUGGUCUCGGacGCuaucuCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 47145 | 0.69 | 0.894418 |
Target: 5'- gGCGuAGCgCAcGAGCCUGUcccuGA-GGAGGGCa -3' miRNA: 3'- -CGU-UUG-GU-CUCGGACG----CUaUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 43435 | 0.69 | 0.894418 |
Target: 5'- cGUccAUCAGuAGCCUGCGGgccgccacaucUGGAGcGGCa -3' miRNA: 3'- -CGuuUGGUC-UCGGACGCU-----------AUCUC-CCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 92821 | 0.69 | 0.894417 |
Target: 5'- gGCAAA--GGGGgCUGCGGUaccAGGGGGUa -3' miRNA: 3'- -CGUUUggUCUCgGACGCUA---UCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 65039 | 0.69 | 0.894417 |
Target: 5'- ----cCCAGGGCCcacUGCGA-GGAGcGGCa -3' miRNA: 3'- cguuuGGUCUCGG---ACGCUaUCUC-CCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 20575 | 0.69 | 0.894417 |
Target: 5'- aCAGACUAGccGGCCUGCGccc--GGGCg -3' miRNA: 3'- cGUUUGGUC--UCGGACGCuaucuCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 139578 | 0.69 | 0.894417 |
Target: 5'- uGUAAGCCcaauGAGgCUGCG---GGGGGCg -3' miRNA: 3'- -CGUUUGGu---CUCgGACGCuauCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 167157 | 0.69 | 0.887593 |
Target: 5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3' miRNA: 3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 99058 | 0.69 | 0.887593 |
Target: 5'- gGCGggUgucggCGGuGCCguaGUGGUGGAGGGCc -3' miRNA: 3'- -CGUuuG-----GUCuCGGa--CGCUAUCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 169953 | 0.69 | 0.887593 |
Target: 5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3' miRNA: 3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 169021 | 0.69 | 0.887593 |
Target: 5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3' miRNA: 3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 168089 | 0.69 | 0.887593 |
Target: 5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3' miRNA: 3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 47670 | 0.69 | 0.887593 |
Target: 5'- cGCGgcGGCCAGGGUCUcGUGgAUGGAggacuuGGGCg -3' miRNA: 3'- -CGU--UUGGUCUCGGA-CGC-UAUCU------CCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 134574 | 0.69 | 0.886898 |
Target: 5'- aGCAGGCU-GAGCUgugcaguuuugauUGUGGggGGAGGGCu -3' miRNA: 3'- -CGUUUGGuCUCGG-------------ACGCUa-UCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 147179 | 0.7 | 0.880536 |
Target: 5'- cGCAGACCGGcGCCccuucgcccggUGCGcagaGGAGGGg -3' miRNA: 3'- -CGUUUGGUCuCGG-----------ACGCua--UCUCCCg -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 168145 | 0.7 | 0.880536 |
Target: 5'- cCGGGCUuGGGCCUGCGAgGGccGGGUa -3' miRNA: 3'- cGUUUGGuCUCGGACGCUaUCu-CCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 122108 | 0.7 | 0.879818 |
Target: 5'- gGCGgaGACCGGGGCCUucgugaaGCuGGUGGAGacGGCc -3' miRNA: 3'- -CGU--UUGGUCUCGGA-------CG-CUAUCUC--CCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 44111 | 0.7 | 0.873251 |
Target: 5'- cCAGGCCccGGCUgcccgGCGAggagGGGGGGCa -3' miRNA: 3'- cGUUUGGucUCGGa----CGCUa---UCUCCCG- -5' |
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29145 | 3' | -53.2 | NC_006146.1 | + | 50026 | 0.7 | 0.873251 |
Target: 5'- uGC-AGCCGGGGUCgagGCGcaGGAGGGa -3' miRNA: 3'- -CGuUUGGUCUCGGa--CGCuaUCUCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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