miRNA display CGI


Results 101 - 120 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 98995 0.66 0.973604
Target:  5'- cCAggUCAGAgGCCgcGCGcaGGAGGGUc -3'
miRNA:   3'- cGUuuGGUCU-CGGa-CGCuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 99058 0.69 0.887593
Target:  5'- gGCGggUgucggCGGuGCCguaGUGGUGGAGGGCc -3'
miRNA:   3'- -CGUuuG-----GUCuCGGa--CGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 102579 0.68 0.935427
Target:  5'- cCGAGCC-GAGCgUGCaGGUcGGGGGGUc -3'
miRNA:   3'- cGUUUGGuCUCGgACG-CUA-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 102796 0.66 0.972504
Target:  5'- cGCGGACCGGcuGGCCgcccaccuggaucGCGc--GGGGGCu -3'
miRNA:   3'- -CGUUUGGUC--UCGGa------------CGCuauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 103376 0.68 0.924936
Target:  5'- aCGAGCguGGgggagauagggcGCCUGCcaGUGGGGGGCg -3'
miRNA:   3'- cGUUUGguCU------------CGGACGc-UAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 104673 0.68 0.924936
Target:  5'- ---uGCCuGcGCC-GCGAUAGAGGGg -3'
miRNA:   3'- cguuUGGuCuCGGaCGCUAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 105179 0.71 0.833609
Target:  5'- cGCAccguccaguGACCGGGGCCgGgGAgccGGGGGUg -3'
miRNA:   3'- -CGU---------UUGGUCUCGGaCgCUau-CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 105630 0.67 0.949325
Target:  5'- uGCAAACgGGuuCCUGUGGUAGcaGGCu -3'
miRNA:   3'- -CGUUUGgUCucGGACGCUAUCucCCG- -5'
29145 3' -53.2 NC_006146.1 + 106213 0.66 0.976215
Target:  5'- ---uGCCAGGGCCUgGUGuccUGGGGGaGUa -3'
miRNA:   3'- cguuUGGUCUCGGA-CGCu--AUCUCC-CG- -5'
29145 3' -53.2 NC_006146.1 + 108522 0.67 0.949325
Target:  5'- cGCGAGCUgaacggccaGGGGCCUcuccggcgcgGCGuUGGAGuGGCu -3'
miRNA:   3'- -CGUUUGG---------UCUCGGA----------CGCuAUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 108684 0.69 0.907354
Target:  5'- uGCGc-CCAGAGgCUGCGGcgcAGGGCu -3'
miRNA:   3'- -CGUuuGGUCUCgGACGCUaucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 110574 0.67 0.960357
Target:  5'- cGCAAACCAGcGgUUGCGGUGGGucucgaccgucaGGCa -3'
miRNA:   3'- -CGUUUGGUCuCgGACGCUAUCUc-----------CCG- -5'
29145 3' -53.2 NC_006146.1 + 112509 0.71 0.816379
Target:  5'- aGCGGuCCAGGGgC--CGGUGGAGGGCc -3'
miRNA:   3'- -CGUUuGGUCUCgGacGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 114943 0.66 0.976215
Target:  5'- cGCu-ACCccuGGGCg-GCGAUggcGGGGGGCa -3'
miRNA:   3'- -CGuuUGGu--CUCGgaCGCUA---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 115651 0.68 0.944935
Target:  5'- cGCuucGCCcGGGCCgcccggGCGAcguaccuGAGGGCg -3'
miRNA:   3'- -CGuu-UGGuCUCGGa-----CGCUau-----CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 116793 0.73 0.711226
Target:  5'- uGCAGACgcucaAGGGC--GUGGUGGAGGGCg -3'
miRNA:   3'- -CGUUUGg----UCUCGgaCGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 117977 0.68 0.944935
Target:  5'- gGCGGACgAG-GCCaGCGcccccGGGGGGCc -3'
miRNA:   3'- -CGUUUGgUCuCGGaCGCua---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 118043 0.7 0.865743
Target:  5'- aCGGACCuGGAGCCccCGGgcGGGGGCg -3'
miRNA:   3'- cGUUUGG-UCUCGGacGCUauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 119945 0.7 0.850084
Target:  5'- cGCugcuGCCGGAgGUCU-CGGUGGGGGGUc -3'
miRNA:   3'- -CGuu--UGGUCU-CGGAcGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 120569 0.68 0.944935
Target:  5'- -aAAACCAGAGCCUGgucaGAgAGAacaGGaGCg -3'
miRNA:   3'- cgUUUGGUCUCGGACg---CUaUCU---CC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.