miRNA display CGI


Results 121 - 140 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 122108 0.7 0.879818
Target:  5'- gGCGgaGACCGGGGCCUucgugaaGCuGGUGGAGacGGCc -3'
miRNA:   3'- -CGU--UUGGUCUCGGA-------CG-CUAUCUC--CCG- -5'
29145 3' -53.2 NC_006146.1 + 122567 0.67 0.962486
Target:  5'- cCAGACUGGAcGCCUggcccaccaccgccaGCaccuccgacGGUGGAGGGCg -3'
miRNA:   3'- cGUUUGGUCU-CGGA---------------CG---------CUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 123089 0.66 0.976215
Target:  5'- gGC-AGCCcGAGCCcaugagacgGCGGUGGgcgcuagacGGGGCu -3'
miRNA:   3'- -CGuUUGGuCUCGGa--------CGCUAUC---------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 127089 0.66 0.96777
Target:  5'- -aGGGCCAGGGCggaGCGGUGGGacaGGCa -3'
miRNA:   3'- cgUUUGGUCUCGga-CGCUAUCUc--CCG- -5'
29145 3' -53.2 NC_006146.1 + 128170 0.69 0.901006
Target:  5'- gGCGAugCAGcgacGCCgggagGCGGcccaGGGGGGCg -3'
miRNA:   3'- -CGUUugGUCu---CGGa----CGCUa---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 128194 0.72 0.760832
Target:  5'- uGCcAGCCcGAGCggGCGcUGGGGGGCu -3'
miRNA:   3'- -CGuUUGGuCUCGgaCGCuAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 128648 0.66 0.973604
Target:  5'- aGCuGAGCCAGcuCCUcGCGccGGAGGGg -3'
miRNA:   3'- -CG-UUUGGUCucGGA-CGCuaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 128845 0.66 0.974672
Target:  5'- gGUAAGCCcggccaggcacaggaAGGGCCa-CGAagAGGGGGCg -3'
miRNA:   3'- -CGUUUGG---------------UCUCGGacGCUa-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 129856 0.68 0.944935
Target:  5'- gGCcc-CCAGGGCCgccGCGGacgGGGGGGa -3'
miRNA:   3'- -CGuuuGGUCUCGGa--CGCUa--UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 131835 0.69 0.913459
Target:  5'- cCAGACCGGAgGCCgGCGAccauucacAGGGCc -3'
miRNA:   3'- cGUUUGGUCU-CGGaCGCUauc-----UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 134574 0.69 0.886898
Target:  5'- aGCAGGCU-GAGCUgugcaguuuugauUGUGGggGGAGGGCu -3'
miRNA:   3'- -CGUUUGGuCUCGG-------------ACGCUa-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 137905 0.66 0.976215
Target:  5'- cGUGGA-CAGGGCCgGgGGUuccGGGGGCa -3'
miRNA:   3'- -CGUUUgGUCUCGGaCgCUAu--CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 137975 0.7 0.850084
Target:  5'- cCGGGCCucccgGGGGCCcgGCGGggUGGGGGGUg -3'
miRNA:   3'- cGUUUGG-----UCUCGGa-CGCU--AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 139038 0.68 0.944935
Target:  5'- cGCAucCCAGGGgCggaaGCGuggacccAGAGGGCg -3'
miRNA:   3'- -CGUuuGGUCUCgGa---CGCua-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 139578 0.69 0.894417
Target:  5'- uGUAAGCCcaauGAGgCUGCG---GGGGGCg -3'
miRNA:   3'- -CGUUUGGu---CUCgGACGCuauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 141311 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 141472 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 141574 0.72 0.789262
Target:  5'- -gGAGCCGGGGCCU-CGG-GGAGGGa -3'
miRNA:   3'- cgUUUGGUCUCGGAcGCUaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 141890 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 142353 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.