miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 154665 0.71 0.816379
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc-UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 154202 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 153885 0.72 0.789262
Target:  5'- -gGAGCCGGGGCCU-CGG-GGAGGGa -3'
miRNA:   3'- cgUUUGGUCUCGGAcGCUaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 153783 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 153623 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 153511 0.68 0.935427
Target:  5'- uGCuu-CUGGAGgCUGUGGauggagUGGGGGGCg -3'
miRNA:   3'- -CGuuuGGUCUCgGACGCU------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 152942 0.7 0.858019
Target:  5'- uUAGGCCuGGGGCCU-CGGagggccUGGAGGGCu -3'
miRNA:   3'- cGUUUGG-UCUCGGAcGCU------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 152889 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 151587 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 151296 0.75 0.597595
Target:  5'- -aAGGCCAGGGCC-GUGuaGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGaCGCuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 151124 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 150807 0.72 0.789262
Target:  5'- -gGAGCCGGGGCCU-CGG-GGAGGGa -3'
miRNA:   3'- cgUUUGGUCUCGGAcGCUaUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 150705 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 150545 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 149977 0.73 0.711227
Target:  5'- -gGGGCCAGGGCCUGCaGGUcggccGGAcucaGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGACG-CUA-----UCU----CCCG- -5'
29145 3' -53.2 NC_006146.1 + 149864 0.7 0.858019
Target:  5'- uUAGGCCuGGGGCCU-CGGagggccUGGAGGGCu -3'
miRNA:   3'- cGUUUGG-UCUCGGAcGCU------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 149811 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 149442 0.68 0.940303
Target:  5'- uGUAGGCCgAGAGCUUGCGGcucagcuccgUGGAGaaGCa -3'
miRNA:   3'- -CGUUUGG-UCUCGGACGCU----------AUCUCc-CG- -5'
29145 3' -53.2 NC_006146.1 + 148509 0.7 0.850084
Target:  5'- gGCAGGCCGGgucuugGGCCUGgGAgguccGGGGUg -3'
miRNA:   3'- -CGUUUGGUC------UCGGACgCUauc--UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 148046 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.