miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 169953 0.69 0.887593
Target:  5'- gGCAcuguGCCAGGGCCUuCGGgacgGGAGGccgGCg -3'
miRNA:   3'- -CGUu---UGGUCUCGGAcGCUa---UCUCC---CG- -5'
29145 3' -53.2 NC_006146.1 + 128170 0.69 0.901006
Target:  5'- gGCGAugCAGcgacGCCgggagGCGGcccaGGGGGGCg -3'
miRNA:   3'- -CGUUugGUCu---CGGa----CGCUa---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 166649 0.76 0.556482
Target:  5'- cGCGGacGCCAGAGCgaGCGGgaaGGGGGaGCg -3'
miRNA:   3'- -CGUU--UGGUCUCGgaCGCUa--UCUCC-CG- -5'
29145 3' -53.2 NC_006146.1 + 168236 0.75 0.618337
Target:  5'- -gGGGCCGGcGCCUGCag-GGGGGGCc -3'
miRNA:   3'- cgUUUGGUCuCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 94933 0.73 0.720318
Target:  5'- aCGAugCAGgggacguGGCCgcUGCGGUAGAGGGg -3'
miRNA:   3'- cGUUugGUC-------UCGG--ACGCUAUCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 169268 0.73 0.735328
Target:  5'- -gGGGCCGGGGCCUgGCGggGGccagcgcggggucccGGGGCg -3'
miRNA:   3'- cgUUUGGUCUCGGA-CGCuaUC---------------UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 41486 0.71 0.825085
Target:  5'- uGCAGauGCgGGAGUUUGUGGUcuGGGGCa -3'
miRNA:   3'- -CGUU--UGgUCUCGGACGCUAucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 66918 0.7 0.850084
Target:  5'- uGCAGACCgGGAGCCUGgGAUuGAaguacucgugccGGGa -3'
miRNA:   3'- -CGUUUGG-UCUCGGACgCUAuCU------------CCCg -5'
29145 3' -53.2 NC_006146.1 + 91696 0.7 0.873251
Target:  5'- cGCGGGCUAGA-CCUGUGGcUGGAGGa- -3'
miRNA:   3'- -CGUUUGGUCUcGGACGCU-AUCUCCcg -5'
29145 3' -53.2 NC_006146.1 + 134574 0.69 0.886898
Target:  5'- aGCAGGCU-GAGCUgugcaguuuugauUGUGGggGGAGGGCu -3'
miRNA:   3'- -CGUUUGGuCUCGG-------------ACGCUa-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 80577 0.66 0.971657
Target:  5'- aGCAGgccuuucacacguGCCGGGGCCUGaauucagaCGAucucaagaccacguuUAGAGaGGCa -3'
miRNA:   3'- -CGUU-------------UGGUCUCGGAC--------GCU---------------AUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 170039 0.66 0.970791
Target:  5'- cGC-GGCCAGucCCUG-GAUgucggGGAGGGCc -3'
miRNA:   3'- -CGuUUGGUCucGGACgCUA-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 41355 0.68 0.919321
Target:  5'- ----cCCAGGGCCUgGCGGUGGu-GGCc -3'
miRNA:   3'- cguuuGGUCUCGGA-CGCUAUCucCCG- -5'
29145 3' -53.2 NC_006146.1 + 47967 0.68 0.924936
Target:  5'- uGCGAuuucuuugGCCAGAGCgUGgGGUcAGAGguGGCu -3'
miRNA:   3'- -CGUU--------UGGUCUCGgACgCUA-UCUC--CCG- -5'
29145 3' -53.2 NC_006146.1 + 129856 0.68 0.944935
Target:  5'- gGCcc-CCAGGGCCgccGCGGacgGGGGGGa -3'
miRNA:   3'- -CGuuuGGUCUCGGa--CGCUa--UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 120569 0.68 0.944935
Target:  5'- -aAAACCAGAGCCUGgucaGAgAGAacaGGaGCg -3'
miRNA:   3'- cgUUUGGUCUCGGACg---CUaUCU---CC-CG- -5'
29145 3' -53.2 NC_006146.1 + 34074 0.67 0.957392
Target:  5'- --uGGCaCGGGGCCgGgGGUcccGGGGGGCa -3'
miRNA:   3'- cguUUG-GUCUCGGaCgCUA---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 47046 0.67 0.957392
Target:  5'- uGCGAGaaGGGGCCggucgccggUGuCGGUgAGGGGGCg -3'
miRNA:   3'- -CGUUUggUCUCGG---------AC-GCUA-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 155771 0.66 0.96777
Target:  5'- uGUAGACCccgccgcagaAGAGCCgcuCGGUGGcccugGGGGCc -3'
miRNA:   3'- -CGUUUGG----------UCUCGGac-GCUAUC-----UCCCG- -5'
29145 3' -53.2 NC_006146.1 + 15961 0.66 0.970499
Target:  5'- gGCAGGCCggucucgggucugGGGGUCUGUGGUGGuGaGCc -3'
miRNA:   3'- -CGUUUGG-------------UCUCGGACGCUAUCuCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.