miRNA display CGI


Results 101 - 120 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 92298 0.73 0.700038
Target:  5'- gGCGGGCCc-GGCCUGgGGcugcugcUGGGGGGCg -3'
miRNA:   3'- -CGUUUGGucUCGGACgCU-------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 92178 0.73 0.700038
Target:  5'- gGCGGGCCc-GGCCUGgGGcugcugcUGGGGGGCg -3'
miRNA:   3'- -CGUUUGGucUCGGACgCU-------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 60464 0.69 0.913459
Target:  5'- gGCAGGCCgcggGGAGCg-GUGAgaggccGGGGGGCc -3'
miRNA:   3'- -CGUUUGG----UCUCGgaCGCUa-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 92059 0.73 0.700038
Target:  5'- gGCGGGCCc-GGCCUGgGGcugcugcUGGGGGGCg -3'
miRNA:   3'- -CGUUUGGucUCGGACgCU-------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 91999 0.73 0.700038
Target:  5'- gGCGGGCCc-GGCCUGgGGcugcugcUGGGGGGCg -3'
miRNA:   3'- -CGUUUGGucUCGGACgCU-------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 70985 0.77 0.516224
Target:  5'- uGCGAcCCGGAGCCcgcucuUGCGcccGGGGGGCa -3'
miRNA:   3'- -CGUUuGGUCUCGG------ACGCua-UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 92238 0.77 0.515232
Target:  5'- gGCGGGCCc-GGCCUGUGGcugcugcUGGGGGGCg -3'
miRNA:   3'- -CGUUUGGucUCGGACGCU-------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 64221 0.69 0.91286
Target:  5'- gGCAGgaggcacaucugcGCCuGGGCCgggGCGggAG-GGGCg -3'
miRNA:   3'- -CGUU-------------UGGuCUCGGa--CGCuaUCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 108684 0.69 0.907354
Target:  5'- uGCGc-CCAGAGgCUGCGGcgcAGGGCu -3'
miRNA:   3'- -CGUuuGGUCUCgGACGCUaucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 40822 0.66 0.978632
Target:  5'- gGCcuuGGCCAuGAGCUUGguaaGGggcAGGGGGCg -3'
miRNA:   3'- -CGu--UUGGU-CUCGGACg---CUa--UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 155967 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 92821 0.69 0.894417
Target:  5'- gGCAAA--GGGGgCUGCGGUaccAGGGGGUa -3'
miRNA:   3'- -CGUUUggUCUCgGACGCUA---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 49054 0.69 0.907354
Target:  5'- cGCGAGCguaGGGGgCUGgauCGAaGGAGGGCu -3'
miRNA:   3'- -CGUUUGg--UCUCgGAC---GCUaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 110574 0.67 0.960357
Target:  5'- cGCAAACCAGcGgUUGCGGUGGGucucgaccgucaGGCa -3'
miRNA:   3'- -CGUUUGGUCuCgGACGCUAUCUc-----------CCG- -5'
29145 3' -53.2 NC_006146.1 + 150545 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 152889 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 149811 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 15285 0.69 0.901006
Target:  5'- gGCuGAACCGGAGCgaGgGGgaGGAGGGg -3'
miRNA:   3'- -CG-UUUGGUCUCGgaCgCUa-UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 153623 0.66 0.970791
Target:  5'- uCGGGCU--GGCCUGCc--AGGGGGCa -3'
miRNA:   3'- cGUUUGGucUCGGACGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 14194 0.69 0.907354
Target:  5'- ----cCCGGAGCCUG-GAcGGGGaGGCg -3'
miRNA:   3'- cguuuGGUCUCGGACgCUaUCUC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.