miRNA display CGI


Results 121 - 140 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 60464 0.69 0.913459
Target:  5'- gGCAGGCCgcggGGAGCg-GUGAgaggccGGGGGGCc -3'
miRNA:   3'- -CGUUUGG----UCUCGgaCGCUa-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 64221 0.69 0.91286
Target:  5'- gGCAGgaggcacaucugcGCCuGGGCCgggGCGggAG-GGGCg -3'
miRNA:   3'- -CGUU-------------UGGuCUCGGa--CGCuaUCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 108684 0.69 0.907354
Target:  5'- uGCGc-CCAGAGgCUGCGGcgcAGGGCu -3'
miRNA:   3'- -CGUuuGGUCUCgGACGCUaucUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 15285 0.69 0.901006
Target:  5'- gGCuGAACCGGAGCgaGgGGgaGGAGGGg -3'
miRNA:   3'- -CG-UUUGGUCUCGgaCgCUa-UCUCCCg -5'
29145 3' -53.2 NC_006146.1 + 92821 0.69 0.894417
Target:  5'- gGCAAA--GGGGgCUGCGGUaccAGGGGGUa -3'
miRNA:   3'- -CGUUUggUCUCgGACGCUA---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 152889 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 155967 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 77961 0.73 0.701059
Target:  5'- -uGGGCCGGAGCCgGUGGccuUGGAGGuGCc -3'
miRNA:   3'- cgUUUGGUCUCGGaCGCU---AUCUCC-CG- -5'
29145 3' -53.2 NC_006146.1 + 116793 0.73 0.711226
Target:  5'- uGCAGACgcucaAGGGC--GUGGUGGAGGGCg -3'
miRNA:   3'- -CGUUUGg----UCUCGgaCGCUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 141890 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 148046 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 151124 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 154202 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 157280 0.73 0.71224
Target:  5'- -gGGACCAGGGCCUccuggGCGucucugggucuggacUGGAGGGCc -3'
miRNA:   3'- cgUUUGGUCUCGGA-----CGCu--------------AUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 162030 0.73 0.731344
Target:  5'- -aAAACUgGGAGCCUGgGGgcGGGGGCa -3'
miRNA:   3'- cgUUUGG-UCUCGGACgCUauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 40889 0.73 0.741275
Target:  5'- -gGAGCCGGGGCCucgucUGCGAUcc-GGGCg -3'
miRNA:   3'- cgUUUGGUCUCGG-----ACGCUAucuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 15049 0.72 0.747187
Target:  5'- gGCccGCCGG-GCCUGCGAggaggcacuggcGGGGGCu -3'
miRNA:   3'- -CGuuUGGUCuCGGACGCUau----------CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 122567 0.67 0.962486
Target:  5'- cCAGACUGGAcGCCUggcccaccaccgccaGCaccuccgacGGUGGAGGGCg -3'
miRNA:   3'- cGUUUGGUCU-CGGA---------------CG---------CUAUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 64158 0.67 0.960718
Target:  5'- -aGGGCCucGGAGUCUGCcaggcugGGUGG-GGGCa -3'
miRNA:   3'- cgUUUGG--UCUCGGACG-------CUAUCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 110574 0.67 0.960357
Target:  5'- cGCAAACCAGcGgUUGCGGUGGGucucgaccgucaGGCa -3'
miRNA:   3'- -CGUUUGGUCuCgGACGCUAUCUc-----------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.