miRNA display CGI


Results 101 - 120 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 3' -53.2 NC_006146.1 + 60464 0.69 0.913459
Target:  5'- gGCAGGCCgcggGGAGCg-GUGAgaggccGGGGGGCc -3'
miRNA:   3'- -CGUUUGG----UCUCGgaCGCUa-----UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 64221 0.69 0.91286
Target:  5'- gGCAGgaggcacaucugcGCCuGGGCCgggGCGggAG-GGGCg -3'
miRNA:   3'- -CGUU-------------UGGuCUCGGa--CGCuaUCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 24226 0.68 0.940303
Target:  5'- -gGGGCCGGGGCCgcccaccGCccgGGAGGGUu -3'
miRNA:   3'- cgUUUGGUCUCGGa------CGcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 141472 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 149811 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 146733 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 143656 0.67 0.957392
Target:  5'- cCGGGCgCAGGGCaagGCGAUGggcGAGGGa -3'
miRNA:   3'- cGUUUG-GUCUCGga-CGCUAU---CUCCCg -5'
29145 3' -53.2 NC_006146.1 + 49291 0.67 0.953476
Target:  5'- cCAGGCaGGAGUCUuccGCGAUgacgagcugugAGGGGGCu -3'
miRNA:   3'- cGUUUGgUCUCGGA---CGCUA-----------UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 108522 0.67 0.949325
Target:  5'- cGCGAGCUgaacggccaGGGGCCUcuccggcgcgGCGuUGGAGuGGCu -3'
miRNA:   3'- -CGUUUGG---------UCUCGGA----------CGCuAUCUC-CCG- -5'
29145 3' -53.2 NC_006146.1 + 115651 0.68 0.944935
Target:  5'- cGCuucGCCcGGGCCgcccggGCGAcguaccuGAGGGCg -3'
miRNA:   3'- -CGuu-UGGuCUCGGa-----CGCUau-----CUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 117977 0.68 0.944935
Target:  5'- gGCGGACgAG-GCCaGCGcccccGGGGGGCc -3'
miRNA:   3'- -CGUUUGgUCuCGGaCGCua---UCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 40018 0.68 0.944935
Target:  5'- gGCGuAGCagGGGGCCUGCu---GGGGGCc -3'
miRNA:   3'- -CGU-UUGg-UCUCGGACGcuauCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 144550 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 147628 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 150705 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 153783 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 156861 0.68 0.940303
Target:  5'- -aGGGCCuG-GCCUGCGggGGAcaGGGUg -3'
miRNA:   3'- cgUUUGGuCuCGGACGCuaUCU--CCCG- -5'
29145 3' -53.2 NC_006146.1 + 170166 0.66 0.978632
Target:  5'- cGCcGGCCGGGGgCUG----AGGGGGCu -3'
miRNA:   3'- -CGuUUGGUCUCgGACgcuaUCUCCCG- -5'
29145 3' -53.2 NC_006146.1 + 68080 0.78 0.430554
Target:  5'- aGCAAGCgCAGAGCCcccgcGCGAUccaGGuGGGCg -3'
miRNA:   3'- -CGUUUG-GUCUCGGa----CGCUA---UCuCCCG- -5'
29145 3' -53.2 NC_006146.1 + 98487 0.78 0.467657
Target:  5'- cGCGGACCAaggucagcaGAGacuCCUGUGAUGGAGGGg -3'
miRNA:   3'- -CGUUUGGU---------CUC---GGACGCUAUCUCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.