miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29146 3' -52.5 NC_006146.1 + 154026 0.66 0.986513
Target:  5'- ---aGCCGGC-CCGCucGUugAaggUCUCCu -3'
miRNA:   3'- cguaCGGUCGaGGCG--CAugUa--AGAGG- -5'
29146 3' -52.5 NC_006146.1 + 70217 0.66 0.986513
Target:  5'- cGgGUGCCgAGggCCGCGaGCGUUucuaCUCCu -3'
miRNA:   3'- -CgUACGG-UCgaGGCGCaUGUAA----GAGG- -5'
29146 3' -52.5 NC_006146.1 + 91221 0.66 0.986513
Target:  5'- ---gGCCGGuCUCUGCuGUACAcUCaUCCc -3'
miRNA:   3'- cguaCGGUC-GAGGCG-CAUGUaAG-AGG- -5'
29146 3' -52.5 NC_006146.1 + 110341 0.66 0.983685
Target:  5'- aGCAUGuUCAGaauguuagcauacguCUCCcCGUgaACGUUCUCCa -3'
miRNA:   3'- -CGUAC-GGUC---------------GAGGcGCA--UGUAAGAGG- -5'
29146 3' -52.5 NC_006146.1 + 111854 0.66 0.980862
Target:  5'- uGCGUGUCGGC-CCGC-UGCGccCUCa -3'
miRNA:   3'- -CGUACGGUCGaGGCGcAUGUaaGAGg -5'
29146 3' -52.5 NC_006146.1 + 85307 0.66 0.980862
Target:  5'- -gGUGCCAGCUUCcgagGCGgGCGgcugcCUCCu -3'
miRNA:   3'- cgUACGGUCGAGG----CGCaUGUaa---GAGG- -5'
29146 3' -52.5 NC_006146.1 + 91378 0.66 0.980862
Target:  5'- uCAUGUcacuCAGCUCCGCGcugaACAc-CUCCu -3'
miRNA:   3'- cGUACG----GUCGAGGCGCa---UGUaaGAGG- -5'
29146 3' -52.5 NC_006146.1 + 157806 0.67 0.978632
Target:  5'- aCAggGCCAGgUCCGaGUACuc-CUCCg -3'
miRNA:   3'- cGUa-CGGUCgAGGCgCAUGuaaGAGG- -5'
29146 3' -52.5 NC_006146.1 + 118416 0.67 0.978632
Target:  5'- aGCAUgGCgCAGCUucacgcucaggaCCGUGUugAUgaggccccUCUCCa -3'
miRNA:   3'- -CGUA-CG-GUCGA------------GGCGCAugUA--------AGAGG- -5'
29146 3' -52.5 NC_006146.1 + 40614 0.67 0.978632
Target:  5'- cGCAUGCCg---CCGC-UGC-UUCUCCc -3'
miRNA:   3'- -CGUACGGucgaGGCGcAUGuAAGAGG- -5'
29146 3' -52.5 NC_006146.1 + 106688 0.67 0.976215
Target:  5'- cGCAgaugugccuccUGCCggAGCUCCGCGacaccuUGCAa-CUCCu -3'
miRNA:   3'- -CGU-----------ACGG--UCGAGGCGC------AUGUaaGAGG- -5'
29146 3' -52.5 NC_006146.1 + 22502 0.67 0.976215
Target:  5'- gGCAUGaCUAGC-CUGCuGUugAUUCUgCu -3'
miRNA:   3'- -CGUAC-GGUCGaGGCG-CAugUAAGAgG- -5'
29146 3' -52.5 NC_006146.1 + 77355 0.67 0.973604
Target:  5'- ---gGCCGGCUUCGUGUGCug---CCu -3'
miRNA:   3'- cguaCGGUCGAGGCGCAUGuaagaGG- -5'
29146 3' -52.5 NC_006146.1 + 48367 0.67 0.970791
Target:  5'- gGCcgGCCucgAGUUCCGCGaACcacccgggCUCCg -3'
miRNA:   3'- -CGuaCGG---UCGAGGCGCaUGuaa-----GAGG- -5'
29146 3' -52.5 NC_006146.1 + 66223 0.67 0.970791
Target:  5'- ---gGcCCAGCUgccccucuaUCGCGgcgcagGCAUUCUCCa -3'
miRNA:   3'- cguaC-GGUCGA---------GGCGCa-----UGUAAGAGG- -5'
29146 3' -52.5 NC_006146.1 + 80773 0.67 0.96777
Target:  5'- cGC-UGCCuccuGCUCCGC-UGCcuccugCUCCa -3'
miRNA:   3'- -CGuACGGu---CGAGGCGcAUGuaa---GAGG- -5'
29146 3' -52.5 NC_006146.1 + 110493 0.68 0.964534
Target:  5'- cCcgGCCAGgUCCaggaGgGUGCAgaugUUCUCCa -3'
miRNA:   3'- cGuaCGGUCgAGG----CgCAUGU----AAGAGG- -5'
29146 3' -52.5 NC_006146.1 + 101047 0.68 0.964534
Target:  5'- uGCAUGCCuGCgcCUGCGUGacccgcUUCUCg -3'
miRNA:   3'- -CGUACGGuCGa-GGCGCAUgu----AAGAGg -5'
29146 3' -52.5 NC_006146.1 + 100296 0.68 0.964534
Target:  5'- gGCAgGCCuGCaCCGCGauCAgagUCUCCa -3'
miRNA:   3'- -CGUaCGGuCGaGGCGCauGUa--AGAGG- -5'
29146 3' -52.5 NC_006146.1 + 78460 0.68 0.961076
Target:  5'- cCAUcCCGGCgCCGC-UACAgUCUCCa -3'
miRNA:   3'- cGUAcGGUCGaGGCGcAUGUaAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.