miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 3' -53.6 NC_006146.1 + 161400 1.09 0.005684
Target:  5'- gUCAACGCGUACCCGCGACCGUAUGUCc -3'
miRNA:   3'- -AGUUGCGCAUGGGCGCUGGCAUACAG- -5'
29147 3' -53.6 NC_006146.1 + 166520 0.75 0.606124
Target:  5'- uUCAugGCGUcggccuggggaGCCCGCGggGCCGUGgccacGUCg -3'
miRNA:   3'- -AGUugCGCA-----------UGGGCGC--UGGCAUa----CAG- -5'
29147 3' -53.6 NC_006146.1 + 169425 0.72 0.766557
Target:  5'- --cACGUGUggagGCCCGCGgagagGCCGUGUGUg -3'
miRNA:   3'- aguUGCGCA----UGGGCGC-----UGGCAUACAg -5'
29147 3' -53.6 NC_006146.1 + 168493 0.72 0.766557
Target:  5'- --cACGUGUggagGCCCGCGgagagGCCGUGUGUg -3'
miRNA:   3'- aguUGCGCA----UGGGCGC-----UGGCAUACAg -5'
29147 3' -53.6 NC_006146.1 + 167561 0.72 0.766557
Target:  5'- --cACGUGUggagGCCCGCGgagagGCCGUGUGUg -3'
miRNA:   3'- aguUGCGCA----UGGGCGC-----UGGCAUACAg -5'
29147 3' -53.6 NC_006146.1 + 170356 0.72 0.766557
Target:  5'- --cACGUGUggagGCCCGCGgagagGCCGUGUGUg -3'
miRNA:   3'- aguUGCGCA----UGGGCGC-----UGGCAUACAg -5'
29147 3' -53.6 NC_006146.1 + 167648 0.72 0.785222
Target:  5'- cCGGCGCGUGCCgGgGGCCcGggggcGUGUCc -3'
miRNA:   3'- aGUUGCGCAUGGgCgCUGG-Ca----UACAG- -5'
29147 3' -53.6 NC_006146.1 + 11521 0.72 0.803336
Target:  5'- aCAGCGCG-GCCUGCGAgCUGgcgGUCa -3'
miRNA:   3'- aGUUGCGCaUGGGCGCU-GGCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 45419 0.7 0.868944
Target:  5'- cCAGCGCGagGCCC-CGGCCGg--GUUg -3'
miRNA:   3'- aGUUGCGCa-UGGGcGCUGGCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 45908 0.7 0.883345
Target:  5'- uUCAGCGCccgGCCgGUGACCGUGccGUa -3'
miRNA:   3'- -AGUUGCGca-UGGgCGCUGGCAUa-CAg -5'
29147 3' -53.6 NC_006146.1 + 98308 0.69 0.896853
Target:  5'- -gAGgGCGUGCuCCGUGGCCGUcUGg- -3'
miRNA:   3'- agUUgCGCAUG-GGCGCUGGCAuACag -5'
29147 3' -53.6 NC_006146.1 + 168357 0.69 0.903262
Target:  5'- cCAGCGCGggguCCCGgGGCgGgggGUCg -3'
miRNA:   3'- aGUUGCGCau--GGGCgCUGgCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 169289 0.69 0.903262
Target:  5'- cCAGCGCGggguCCCGgGGCgGgggGUCg -3'
miRNA:   3'- aGUUGCGCau--GGGCgCUGgCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 170220 0.69 0.903262
Target:  5'- cCAGCGCGggguCCCGgGGCgGgggGUCg -3'
miRNA:   3'- aGUUGCGCau--GGGCgCUGgCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 168580 0.69 0.903262
Target:  5'- cCGGCGCGUGCCgGgGGacCCGggggcGUGUCc -3'
miRNA:   3'- aGUUGCGCAUGGgCgCU--GGCa----UACAG- -5'
29147 3' -53.6 NC_006146.1 + 169512 0.69 0.903262
Target:  5'- cCGGCGCGUGCCgGgGGacCCGggggcGUGUCc -3'
miRNA:   3'- aGUUGCGCAUGGgCgCU--GGCa----UACAG- -5'
29147 3' -53.6 NC_006146.1 + 170443 0.69 0.903262
Target:  5'- cCGGCGCGUGCCgGgGGacCCGggggcGUGUCc -3'
miRNA:   3'- aGUUGCGCAUGGgCgCU--GGCa----UACAG- -5'
29147 3' -53.6 NC_006146.1 + 167425 0.69 0.903262
Target:  5'- cCAGCGCGggguCCCGgGGCgGgggGUCg -3'
miRNA:   3'- aGUUGCGCau--GGGCgCUGgCauaCAG- -5'
29147 3' -53.6 NC_006146.1 + 166830 0.69 0.909438
Target:  5'- gUCGACGCG-GCCCGgGuCCGcGUGg- -3'
miRNA:   3'- -AGUUGCGCaUGGGCgCuGGCaUACag -5'
29147 3' -53.6 NC_006146.1 + 49038 0.69 0.915377
Target:  5'- -gGGCGCG-GCCCGaGACCGUcgcGUCg -3'
miRNA:   3'- agUUGCGCaUGGGCgCUGGCAua-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.