Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29147 | 3' | -53.6 | NC_006146.1 | + | 166779 | 0.66 | 0.968239 |
Target: 5'- gUCAcGCGCGUAgUCGCuGGCCGcc-GUCa -3' miRNA: 3'- -AGU-UGCGCAUgGGCG-CUGGCauaCAG- -5' |
|||||||
29147 | 3' | -53.6 | NC_006146.1 | + | 106639 | 0.66 | 0.968239 |
Target: 5'- gCAGCGCcUG-CUGCGGCCGgcugGUCa -3' miRNA: 3'- aGUUGCGcAUgGGCGCUGGCaua-CAG- -5' |
|||||||
29147 | 3' | -53.6 | NC_006146.1 | + | 85348 | 0.67 | 0.958124 |
Target: 5'- -----aCGUGCCCcCGACCGUGUGa- -3' miRNA: 3'- aguugcGCAUGGGcGCUGGCAUACag -5' |
|||||||
29147 | 3' | -53.6 | NC_006146.1 | + | 102776 | 0.67 | 0.95431 |
Target: 5'- gCGugGCGUGgcgccgcuCCCGCGgACCGgcUGg- -3' miRNA: 3'- aGUugCGCAU--------GGGCGC-UGGCauACag -5' |
|||||||
29147 | 3' | -53.6 | NC_006146.1 | + | 113453 | 0.68 | 0.926539 |
Target: 5'- -aAACGUG-AgCCGCGGCCcggcuuccucGUAUGUCa -3' miRNA: 3'- agUUGCGCaUgGGCGCUGG----------CAUACAG- -5' |
|||||||
29147 | 3' | -53.6 | NC_006146.1 | + | 166830 | 0.69 | 0.909438 |
Target: 5'- gUCGACGCG-GCCCGgGuCCGcGUGg- -3' miRNA: 3'- -AGUUGCGCaUGGGCgCuGGCaUACag -5' |
|||||||
29147 | 3' | -53.6 | NC_006146.1 | + | 11521 | 0.72 | 0.803336 |
Target: 5'- aCAGCGCG-GCCUGCGAgCUGgcgGUCa -3' miRNA: 3'- aGUUGCGCaUGGGCGCU-GGCauaCAG- -5' |
|||||||
29147 | 3' | -53.6 | NC_006146.1 | + | 166520 | 0.75 | 0.606124 |
Target: 5'- uUCAugGCGUcggccuggggaGCCCGCGggGCCGUGgccacGUCg -3' miRNA: 3'- -AGUugCGCA-----------UGGGCGC--UGGCAUa----CAG- -5' |
|||||||
29147 | 3' | -53.6 | NC_006146.1 | + | 71539 | 0.66 | 0.976485 |
Target: 5'- cUCAACGCGcgGCCCGgGcGCCGa----- -3' miRNA: 3'- -AGUUGCGCa-UGGGCgC-UGGCauacag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home