miRNA display CGI


Results 121 - 140 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 33611 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 124151 0.67 0.441235
Target:  5'- -gGUCGGGaGGCGaGGACCCUG-GCCa -3'
miRNA:   3'- uaCGGUCUcCCGCgCCUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 42844 0.68 0.408052
Target:  5'- -gGCCucGAGGGcCGCcaGGCCCaCGCGCa -3'
miRNA:   3'- uaCGGu-CUCCC-GCGc-CUGGG-GCGCGg -5'
29147 5' -65.4 NC_006146.1 + 72024 0.68 0.4113
Target:  5'- -aGCgGGGGaguggguggugacucGGCGCaGGcACCCCGcCGCCa -3'
miRNA:   3'- uaCGgUCUC---------------CCGCG-CC-UGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 15968 0.68 0.368841
Target:  5'- -aGaCCuGGGGGCGUu--CCCUGCGCCu -3'
miRNA:   3'- uaC-GGuCUCCCGCGccuGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 44783 0.68 0.365818
Target:  5'- cGUGCCgggcucaGGGGGGCGCagcgucuaauacugGGACCUCuguagggggccgGCGCCc -3'
miRNA:   3'- -UACGG-------UCUCCCGCG--------------CCUGGGG------------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 59724 0.68 0.388907
Target:  5'- -gGUCGGGGGGCGCaucucucgccuCCCCgaGCGCCu -3'
miRNA:   3'- uaCGGUCUCCCGCGccu--------GGGG--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 21030 0.68 0.384213
Target:  5'- aGUGCCggggauucucGGAGGGCGa-GACgCUGCGCUu -3'
miRNA:   3'- -UACGG----------UCUCCCGCgcCUGgGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 114075 0.68 0.368841
Target:  5'- -cGCCAGAGGcCGCcucGGgggccagaaGCCCCGCccGCCa -3'
miRNA:   3'- uaCGGUCUCCcGCG---CC---------UGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 170201 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 120830 0.68 0.419489
Target:  5'- gGUGCCgcacaagcgcuuccuGGAGGGCcuGCuGGACugcgccucccuCCUGCGCCu -3'
miRNA:   3'- -UACGG---------------UCUCCCG--CG-CCUG-----------GGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 30205 0.68 0.399204
Target:  5'- -aGCCAGAGGGC-CGcuGCgCCCGCcgggcugGCCg -3'
miRNA:   3'- uaCGGUCUCCCGcGCc-UG-GGGCG-------CGG- -5'
29147 5' -65.4 NC_006146.1 + 33478 0.68 0.399204
Target:  5'- -gGUCGGgaagggaGGGGCGUGGuCCCCGgGaCCc -3'
miRNA:   3'- uaCGGUC-------UCCCGCGCCuGGGGCgC-GG- -5'
29147 5' -65.4 NC_006146.1 + 147106 0.68 0.408052
Target:  5'- -gGCgAGcuGGGGCucaGCGGGCCCCagacGCGCa -3'
miRNA:   3'- uaCGgUC--UCCCG---CGCCUGGGG----CGCGg -5'
29147 5' -65.4 NC_006146.1 + 167406 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 168338 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 169270 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 170680 0.68 0.408052
Target:  5'- -gGCCAG-GGGCGCcccggGGACCgUCGCGg- -3'
miRNA:   3'- uaCGGUCuCCCGCG-----CCUGG-GGCGCgg -5'
29147 5' -65.4 NC_006146.1 + 67672 0.68 0.416202
Target:  5'- -aGCCAcc--GCGCGGAUCUCGCGCg -3'
miRNA:   3'- uaCGGUcuccCGCGCCUGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 151307 0.68 0.416202
Target:  5'- cGUGUaGGAGGGC-CaGGAgcuguCCUCGCGCCg -3'
miRNA:   3'- -UACGgUCUCCCGcG-CCU-----GGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.