miRNA display CGI


Results 141 - 160 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 15968 0.68 0.368841
Target:  5'- -aGaCCuGGGGGCGUu--CCCUGCGCCu -3'
miRNA:   3'- uaC-GGuCUCCCGCGccuGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 114075 0.68 0.368841
Target:  5'- -cGCCAGAGGcCGCcucGGgggccagaaGCCCCGCccGCCa -3'
miRNA:   3'- uaCGGUCUCCcGCG---CC---------UGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 114301 0.68 0.368841
Target:  5'- -cGCCggcgaGGAGaccGGCgGCGGGCUCgGCGCCc -3'
miRNA:   3'- uaCGG-----UCUC---CCG-CGCCUGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 123656 0.68 0.376474
Target:  5'- -gGCCAGGGGccaCGUcGA-CCCGCGCCa -3'
miRNA:   3'- uaCGGUCUCCc--GCGcCUgGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 11817 0.68 0.384213
Target:  5'- cUGCaGGAGGGgaagGUgGGACCCCuuGCGCCg -3'
miRNA:   3'- uACGgUCUCCCg---CG-CCUGGGG--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 101250 0.68 0.384213
Target:  5'- -aGCUGGAGGaggacCGCGGGCCCauuaGcCGCCc -3'
miRNA:   3'- uaCGGUCUCCc----GCGCCUGGGg---C-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 126196 0.68 0.384213
Target:  5'- -gGCCAGcGGGgGCcacGGCCaCCGcCGCCa -3'
miRNA:   3'- uaCGGUCuCCCgCGc--CUGG-GGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 21030 0.68 0.384213
Target:  5'- aGUGCCggggauucucGGAGGGCGa-GACgCUGCGCUu -3'
miRNA:   3'- -UACGG----------UCUCCCGCgcCUGgGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 9909 0.68 0.384213
Target:  5'- -gGCCAGgcaGGaGGCGaCGGAgCCCGCGa- -3'
miRNA:   3'- uaCGGUC---UC-CCGC-GCCUgGGGCGCgg -5'
29147 5' -65.4 NC_006146.1 + 67672 0.68 0.416202
Target:  5'- -aGCCAcc--GCGCGGAUCUCGCGCg -3'
miRNA:   3'- uaCGGUcuccCGCGCCUGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 170680 0.68 0.408052
Target:  5'- -gGCCAG-GGGCGCcccggGGACCgUCGCGg- -3'
miRNA:   3'- uaCGGUCuCCCGCG-----CCUGG-GGCGCgg -5'
29147 5' -65.4 NC_006146.1 + 151307 0.68 0.416202
Target:  5'- cGUGUaGGAGGGC-CaGGAgcuguCCUCGCGCCg -3'
miRNA:   3'- -UACGgUCUCCCGcG-CCU-----GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 128193 0.68 0.400003
Target:  5'- cUGCCAGcccgagcGGGCGCugggGGGCUCUGCcaGCCu -3'
miRNA:   3'- uACGGUCu------CCCGCG----CCUGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 76959 0.69 0.332292
Target:  5'- -cGCCuGGGacGGagaGCGGAgCCCCGcCGCCg -3'
miRNA:   3'- uaCGGuCUC--CCg--CGCCU-GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 17575 0.69 0.324617
Target:  5'- -cGCCAGAucaaucggaugcuGGGCGaccuggccCGGGCCUgGUGCCu -3'
miRNA:   3'- uaCGGUCU-------------CCCGC--------GCCUGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 1215 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 2147 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 3079 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 33030 0.69 0.325309
Target:  5'- cUGCCGGcccGGGGCG-GGGCCCgGgacaCGCCc -3'
miRNA:   3'- uACGGUC---UCCCGCgCCUGGGgC----GCGG- -5'
29147 5' -65.4 NC_006146.1 + 88789 0.69 0.325309
Target:  5'- uGUGCUAcAGGGCGUGGAgCCUGCuggGCa -3'
miRNA:   3'- -UACGGUcUCCCGCGCCUgGGGCG---CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.