Results 81 - 100 of 288 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 53494 | 0.7 | 0.307667 |
Target: 5'- -gGCCGGGGGuGCggucuggcucuggcuGCGGGCCgCGCGUg -3' miRNA: 3'- uaCGGUCUCC-CG---------------CGCCUGGgGCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 129369 | 0.7 | 0.305018 |
Target: 5'- -aGCCucaGGAGGaGCccGCGGAUCCCGgGCg -3' miRNA: 3'- uaCGG---UCUCC-CG--CGCCUGGGGCgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 154887 | 0.7 | 0.305018 |
Target: 5'- -cGUCGGGGGGCa-GGGCCUCGC-CCg -3' miRNA: 3'- uaCGGUCUCCCGcgCCUGGGGCGcGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 45409 | 0.7 | 0.298474 |
Target: 5'- -cGUCGGuGGGCcagcGCGaGGCCCCG-GCCg -3' miRNA: 3'- uaCGGUCuCCCG----CGC-CUGGGGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 44078 | 0.7 | 0.298474 |
Target: 5'- cAUGCCGGgacuGGGGUGguuccaccuCGGGCCgCGCGCUc -3' miRNA: 3'- -UACGGUC----UCCCGC---------GCCUGGgGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 55706 | 0.7 | 0.292039 |
Target: 5'- -cGCCGGGGGGCucugcccgccGCuGGCCuCCGCGUa -3' miRNA: 3'- uaCGGUCUCCCG----------CGcCUGG-GGCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 1142 | 0.7 | 0.277651 |
Target: 5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3' miRNA: 3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 167067 | 0.7 | 0.318436 |
Target: 5'- -gGuCCGGuAGGGCaGCGGggguGCCCCGCcugGCCu -3' miRNA: 3'- uaC-GGUC-UCCCG-CGCC----UGGGGCG---CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 14821 | 0.7 | 0.292039 |
Target: 5'- -gGCCggaGGAGGGCacggucuCGGGCCCgGgGCCg -3' miRNA: 3'- uaCGG---UCUCCCGc------GCCUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 2074 | 0.7 | 0.277651 |
Target: 5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3' miRNA: 3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 3006 | 0.7 | 0.277651 |
Target: 5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3' miRNA: 3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 143419 | 0.7 | 0.305018 |
Target: 5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3' miRNA: 3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 146497 | 0.7 | 0.305018 |
Target: 5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3' miRNA: 3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 152653 | 0.7 | 0.305018 |
Target: 5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3' miRNA: 3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 155730 | 0.7 | 0.305018 |
Target: 5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3' miRNA: 3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 76375 | 0.7 | 0.318436 |
Target: 5'- -cGCCacgAGAGGGCGCgccgggggagGGACCggggGCGCCg -3' miRNA: 3'- uaCGG---UCUCCCGCG----------CCUGGgg--CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 129628 | 0.7 | 0.318436 |
Target: 5'- -cGCCGGGuccuccgcGGGCGCGuGCUCCGC-CCg -3' miRNA: 3'- uaCGGUCU--------CCCGCGCcUGGGGCGcGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 117581 | 0.7 | 0.291402 |
Target: 5'- -cGCCGGGccuccucGGGCuCGGACUCCG-GCCa -3' miRNA: 3'- uaCGGUCU-------CCCGcGCCUGGGGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 149575 | 0.7 | 0.305018 |
Target: 5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3' miRNA: 3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 50885 | 0.7 | 0.311002 |
Target: 5'- uGUGcCCGGAcuggcgcGGGUGCGGccuggGCCuCCGUGCCc -3' miRNA: 3'- -UAC-GGUCU-------CCCGCGCC-----UGG-GGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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