miRNA display CGI


Results 101 - 120 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 1142 0.7 0.277651
Target:  5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3'
miRNA:   3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 3006 0.7 0.277651
Target:  5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3'
miRNA:   3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 53494 0.7 0.307667
Target:  5'- -gGCCGGGGGuGCggucuggcucuggcuGCGGGCCgCGCGUg -3'
miRNA:   3'- uaCGGUCUCC-CG---------------CGCCUGGgGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 17575 0.69 0.324617
Target:  5'- -cGCCAGAucaaucggaugcuGGGCGaccuggccCGGGCCUgGUGCCu -3'
miRNA:   3'- uaCGGUCU-------------CCCGC--------GCCUGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 143053 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 3079 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 1215 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 2147 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 113956 0.69 0.353897
Target:  5'- cUGCUugaacuggaagaGGGGGGUGCccggGGGCUCCGCGUUg -3'
miRNA:   3'- uACGG------------UCUCCCGCG----CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 122856 0.69 0.346586
Target:  5'- cUGCCc-GGGGCGCuGGACgaCCCGaGCCg -3'
miRNA:   3'- uACGGucUCCCGCG-CCUG--GGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 66711 0.69 0.346586
Target:  5'- -gGCCccguGGGGGCGCagacGGCCCUGCGaCUg -3'
miRNA:   3'- uaCGGu---CUCCCGCGc---CUGGGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 211 0.69 0.346586
Target:  5'- gGUGCCcccgcgacGGuccccGGGGCGCcccuGGccucCCCCGCGCCg -3'
miRNA:   3'- -UACGG--------UC-----UCCCGCG----CCu---GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 76959 0.69 0.332292
Target:  5'- -cGCCuGGGacGGagaGCGGAgCCCCGcCGCCg -3'
miRNA:   3'- uaCGGuCUC--CCg--CGCCU-GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 158444 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 155365 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 152287 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 149209 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 146131 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 88789 0.69 0.325309
Target:  5'- uGUGCUAcAGGGCGUGGAgCCUGCuggGCa -3'
miRNA:   3'- -UACGGUcUCCCGCGCCUgGGGCG---CGg -5'
29147 5' -65.4 NC_006146.1 + 33030 0.69 0.325309
Target:  5'- cUGCCGGcccGGGGCG-GGGCCCgGgacaCGCCc -3'
miRNA:   3'- uACGGUC---UCCCGCgCCUGGGgC----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.