Results 121 - 140 of 288 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 149209 | 0.69 | 0.325309 |
Target: 5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3' miRNA: 3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 152287 | 0.69 | 0.325309 |
Target: 5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3' miRNA: 3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 155365 | 0.69 | 0.325309 |
Target: 5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3' miRNA: 3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 158444 | 0.69 | 0.325309 |
Target: 5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3' miRNA: 3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 76959 | 0.69 | 0.332292 |
Target: 5'- -cGCCuGGGacGGagaGCGGAgCCCCGcCGCCg -3' miRNA: 3'- uaCGGuCUC--CCg--CGCCU-GGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 211 | 0.69 | 0.346586 |
Target: 5'- gGUGCCcccgcgacGGuccccGGGGCGCcccuGGccucCCCCGCGCCg -3' miRNA: 3'- -UACGG--------UC-----UCCCGCG----CCu---GGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 66711 | 0.69 | 0.346586 |
Target: 5'- -gGCCccguGGGGGCGCagacGGCCCUGCGaCUg -3' miRNA: 3'- uaCGGu---CUCCCGCGc---CUGGGGCGC-GG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33030 | 0.69 | 0.325309 |
Target: 5'- cUGCCGGcccGGGGCG-GGGCCCgGgacaCGCCc -3' miRNA: 3'- uACGGUC---UCCCGCgCCUGGGgC----GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 3079 | 0.69 | 0.325309 |
Target: 5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3' miRNA: 3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 113956 | 0.69 | 0.353897 |
Target: 5'- cUGCUugaacuggaagaGGGGGGUGCccggGGGCUCCGCGUUg -3' miRNA: 3'- uACGG------------UCUCCCGCG----CCUGGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 168838 | 0.69 | 0.361315 |
Target: 5'- aAUGCCGacGAGGGCcaacucuCGGGCCCUcucuugGCGCUg -3' miRNA: 3'- -UACGGU--CUCCCGc------GCCUGGGG------CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 41771 | 0.69 | 0.360568 |
Target: 5'- -cGCCGGAGGcccuGCGCccGGGCgCCCGCucucaggcccucuGCCg -3' miRNA: 3'- uaCGGUCUCC----CGCG--CCUG-GGGCG-------------CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 103265 | 0.69 | 0.353897 |
Target: 5'- gAUGCCuacAGGGGGCGCcuuccacuGGCCUCG-GCCg -3' miRNA: 3'- -UACGG---UCUCCCGCGc-------CUGGGGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 17575 | 0.69 | 0.324617 |
Target: 5'- -cGCCAGAucaaucggaugcuGGGCGaccuggccCGGGCCUgGUGCCu -3' miRNA: 3'- uaCGGUCU-------------CCCGC--------GCCUGGGgCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 1215 | 0.69 | 0.325309 |
Target: 5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3' miRNA: 3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 44783 | 0.68 | 0.365818 |
Target: 5'- cGUGCCgggcucaGGGGGGCGCagcgucuaauacugGGACCUCuguagggggccgGCGCCc -3' miRNA: 3'- -UACGG-------UCUCCCGCG--------------CCUGGGG------------CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 15968 | 0.68 | 0.368841 |
Target: 5'- -aGaCCuGGGGGCGUu--CCCUGCGCCu -3' miRNA: 3'- uaC-GGuCUCCCGCGccuGGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 114075 | 0.68 | 0.368841 |
Target: 5'- -cGCCAGAGGcCGCcucGGgggccagaaGCCCCGCccGCCa -3' miRNA: 3'- uaCGGUCUCCcGCG---CC---------UGGGGCG--CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 114301 | 0.68 | 0.368841 |
Target: 5'- -cGCCggcgaGGAGaccGGCgGCGGGCUCgGCGCCc -3' miRNA: 3'- uaCGG-----UCUC---CCG-CGCCUGGGgCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 123656 | 0.68 | 0.376474 |
Target: 5'- -gGCCAGGGGccaCGUcGA-CCCGCGCCa -3' miRNA: 3'- uaCGGUCUCCc--GCGcCUgGGGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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