miRNA display CGI


Results 81 - 100 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 3006 0.7 0.277651
Target:  5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3'
miRNA:   3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 167093 0.7 0.279496
Target:  5'- aGUGa-GGGGGGCGUGGccaucCCCCGCGUg -3'
miRNA:   3'- -UACggUCUCCCGCGCCu----GGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 117581 0.7 0.291402
Target:  5'- -cGCCGGGccuccucGGGCuCGGACUCCG-GCCa -3'
miRNA:   3'- uaCGGUCU-------CCCGcGCCUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 14821 0.7 0.292039
Target:  5'- -gGCCggaGGAGGGCacggucuCGGGCCCgGgGCCg -3'
miRNA:   3'- uaCGG---UCUCCCGc------GCCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 55706 0.7 0.292039
Target:  5'- -cGCCGGGGGGCucugcccgccGCuGGCCuCCGCGUa -3'
miRNA:   3'- uaCGGUCUCCCG----------CGcCUGG-GGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 45409 0.7 0.298474
Target:  5'- -cGUCGGuGGGCcagcGCGaGGCCCCG-GCCg -3'
miRNA:   3'- uaCGGUCuCCCG----CGC-CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 44078 0.7 0.298474
Target:  5'- cAUGCCGGgacuGGGGUGguuccaccuCGGGCCgCGCGCUc -3'
miRNA:   3'- -UACGGUC----UCCCGC---------GCCUGGgGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 154887 0.7 0.305018
Target:  5'- -cGUCGGGGGGCa-GGGCCUCGC-CCg -3'
miRNA:   3'- uaCGGUCUCCCGcgCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 45038 0.7 0.305018
Target:  5'- -gGCCuucgaGGAGGGCcucGCGGGCCuuGgGCUu -3'
miRNA:   3'- uaCGG-----UCUCCCG---CGCCUGGggCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 146497 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 149575 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 152653 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 155730 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 129369 0.7 0.305018
Target:  5'- -aGCCucaGGAGGaGCccGCGGAUCCCGgGCg -3'
miRNA:   3'- uaCGG---UCUCC-CG--CGCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 143419 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 53494 0.7 0.307667
Target:  5'- -gGCCGGGGGuGCggucuggcucuggcuGCGGGCCgCGCGUg -3'
miRNA:   3'- uaCGGUCUCC-CG---------------CGCCUGGgGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 50885 0.7 0.311002
Target:  5'- uGUGcCCGGAcuggcgcGGGUGCGGccuggGCCuCCGUGCCc -3'
miRNA:   3'- -UAC-GGUCU-------CCCGCGCC-----UGG-GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 167654 0.7 0.311672
Target:  5'- cGUGCCGG-GGGCcCGGGggcgugUCCCGCGaCCc -3'
miRNA:   3'- -UACGGUCuCCCGcGCCU------GGGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 137857 0.7 0.311672
Target:  5'- -gGUgGGuGGGCGUgucccGGGCCCCGCcCCg -3'
miRNA:   3'- uaCGgUCuCCCGCG-----CCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 167067 0.7 0.318436
Target:  5'- -gGuCCGGuAGGGCaGCGGggguGCCCCGCcugGCCu -3'
miRNA:   3'- uaC-GGUC-UCCCG-CGCC----UGGGGCG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.