miRNA display CGI


Results 101 - 120 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 44371 0.7 0.318436
Target:  5'- gGUGCCAGAcccccgcccgggGGGCGUgugGGGCCgggcaCgGCGCCu -3'
miRNA:   3'- -UACGGUCU------------CCCGCG---CCUGG-----GgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 76375 0.7 0.318436
Target:  5'- -cGCCacgAGAGGGCGCgccgggggagGGACCggggGCGCCg -3'
miRNA:   3'- uaCGG---UCUCCCGCG----------CCUGGgg--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 167067 0.7 0.318436
Target:  5'- -gGuCCGGuAGGGCaGCGGggguGCCCCGCcugGCCu -3'
miRNA:   3'- uaC-GGUC-UCCCG-CGCC----UGGGGCG---CGG- -5'
29147 5' -65.4 NC_006146.1 + 17575 0.69 0.324617
Target:  5'- -cGCCAGAucaaucggaugcuGGGCGaccuggccCGGGCCUgGUGCCu -3'
miRNA:   3'- uaCGGUCU-------------CCCGC--------GCCUGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 54864 0.69 0.324617
Target:  5'- -gGCCGGGaaaaauGGGCuGCGGGCguagcgggguccgCUCGCGCCg -3'
miRNA:   3'- uaCGGUCU------CCCG-CGCCUG-------------GGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 149209 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 3079 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 1215 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 2147 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 33030 0.69 0.325309
Target:  5'- cUGCCGGcccGGGGCG-GGGCCCgGgacaCGCCc -3'
miRNA:   3'- uACGGUC---UCCCGCgCCUGGGgC----GCGG- -5'
29147 5' -65.4 NC_006146.1 + 158444 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 155365 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 152287 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 146131 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 143053 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 88789 0.69 0.325309
Target:  5'- uGUGCUAcAGGGCGUGGAgCCUGCuggGCa -3'
miRNA:   3'- -UACGGUcUCCCGCGCCUgGGGCG---CGg -5'
29147 5' -65.4 NC_006146.1 + 97850 0.69 0.325309
Target:  5'- cUGgaGGAGGGgGCcgccGACCCCGgGCCg -3'
miRNA:   3'- uACggUCUCCCgCGc---CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 76959 0.69 0.332292
Target:  5'- -cGCCuGGGacGGagaGCGGAgCCCCGcCGCCg -3'
miRNA:   3'- uaCGGuCUC--CCg--CGCCU-GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 131207 0.69 0.332292
Target:  5'- cUGCCuccGGAGcGGCGCugcaggcccaGGAgCCCGcCGCCu -3'
miRNA:   3'- uACGG---UCUC-CCGCG----------CCUgGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 34028 0.69 0.332292
Target:  5'- -gGgCAGGcGGGCGUGGuCCCgGgGCCu -3'
miRNA:   3'- uaCgGUCU-CCCGCGCCuGGGgCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.