miRNA display CGI


Results 141 - 160 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 48233 0.68 0.368841
Target:  5'- -cGCCuggguGAGcgccGCGCGGAgggcCCCCGcCGCCg -3'
miRNA:   3'- uaCGGu----CUCc---CGCGCCU----GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 47527 0.68 0.376474
Target:  5'- -aGCCAGGuuGCG-GGGCCCCcggccaGCGCCa -3'
miRNA:   3'- uaCGGUCUccCGCgCCUGGGG------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 123656 0.68 0.376474
Target:  5'- -gGCCAGGGGccaCGUcGA-CCCGCGCCa -3'
miRNA:   3'- uaCGGUCUCCc--GCGcCUgGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 21030 0.68 0.384213
Target:  5'- aGUGCCggggauucucGGAGGGCGa-GACgCUGCGCUu -3'
miRNA:   3'- -UACGG----------UCUCCCGCgcCUGgGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 126196 0.68 0.384213
Target:  5'- -gGCCAGcGGGgGCcacGGCCaCCGcCGCCa -3'
miRNA:   3'- uaCGGUCuCCCgCGc--CUGG-GGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 72477 0.68 0.384213
Target:  5'- --aCCGGuucuGGGCGCuu-CCCCGUGCCu -3'
miRNA:   3'- uacGGUCu---CCCGCGccuGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 101250 0.68 0.384213
Target:  5'- -aGCUGGAGGaggacCGCGGGCCCauuaGcCGCCc -3'
miRNA:   3'- uaCGGUCUCCc----GCGCCUGGGg---C-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 11817 0.68 0.384213
Target:  5'- cUGCaGGAGGGgaagGUgGGACCCCuuGCGCCg -3'
miRNA:   3'- uACGgUCUCCCg---CG-CCUGGGG--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 37382 0.68 0.384213
Target:  5'- -aGCCAGuGGGUcuuaGCaGGCCCCaaGCCc -3'
miRNA:   3'- uaCGGUCuCCCG----CGcCUGGGGcgCGG- -5'
29147 5' -65.4 NC_006146.1 + 9909 0.68 0.384213
Target:  5'- -gGCCAGgcaGGaGGCGaCGGAgCCCGCGa- -3'
miRNA:   3'- uaCGGUC---UC-CCGC-GCCUgGGGCGCgg -5'
29147 5' -65.4 NC_006146.1 + 59724 0.68 0.388907
Target:  5'- -gGUCGGGGGGCGCaucucucgccuCCCCgaGCGCCu -3'
miRNA:   3'- uaCGGUCUCCCGCGccu--------GGGG--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 33478 0.68 0.399204
Target:  5'- -gGUCGGgaagggaGGGGCGUGGuCCCCGgGaCCc -3'
miRNA:   3'- uaCGGUC-------UCCCGCGCCuGGGGCgC-GG- -5'
29147 5' -65.4 NC_006146.1 + 30205 0.68 0.399204
Target:  5'- -aGCCAGAGGGC-CGcuGCgCCCGCcgggcugGCCg -3'
miRNA:   3'- uaCGGUCUCCCGcGCc-UG-GGGCG-------CGG- -5'
29147 5' -65.4 NC_006146.1 + 128193 0.68 0.400003
Target:  5'- cUGCCAGcccgagcGGGCGCugggGGGCUCUGCcaGCCu -3'
miRNA:   3'- uACGGUCu------CCCGCG----CCUGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 53461 0.68 0.400003
Target:  5'- cUGCCcGGGaGGCGCGGguGCCUCGUcgGUCa -3'
miRNA:   3'- uACGGuCUC-CCGCGCC--UGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 147106 0.68 0.408052
Target:  5'- -gGCgAGcuGGGGCucaGCGGGCCCCagacGCGCa -3'
miRNA:   3'- uaCGgUC--UCCCG---CGCCUGGGG----CGCGg -5'
29147 5' -65.4 NC_006146.1 + 167406 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 168338 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 169270 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 42844 0.68 0.408052
Target:  5'- -gGCCucGAGGGcCGCcaGGCCCaCGCGCa -3'
miRNA:   3'- uaCGGu-CUCCC-GCGc-CUGGG-GCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.