miRNA display CGI


Results 161 - 180 of 288 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 170201 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 170680 0.68 0.408052
Target:  5'- -gGCCAG-GGGCGCcccggGGACCgUCGCGg- -3'
miRNA:   3'- uaCGGUCuCCCGCG-----CCUGG-GGCGCgg -5'
29147 5' -65.4 NC_006146.1 + 72024 0.68 0.4113
Target:  5'- -aGCgGGGGaguggguggugacucGGCGCaGGcACCCCGcCGCCa -3'
miRNA:   3'- uaCGgUCUC---------------CCGCG-CC-UGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 67672 0.68 0.416202
Target:  5'- -aGCCAcc--GCGCGGAUCUCGCGCg -3'
miRNA:   3'- uaCGGUcuccCGCGCCUGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 151307 0.68 0.416202
Target:  5'- cGUGUaGGAGGGC-CaGGAgcuguCCUCGCGCCg -3'
miRNA:   3'- -UACGgUCUCCCGcG-CCU-----GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 120830 0.68 0.419489
Target:  5'- gGUGCCgcacaagcgcuuccuGGAGGGCcuGCuGGACugcgccucccuCCUGCGCCu -3'
miRNA:   3'- -UACGG---------------UCUCCCG--CG-CCUG-----------GGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 50283 0.67 0.423621
Target:  5'- -gGCCAaGGGGCGCaGGagaucugucaggcGCCgCCGgGCCu -3'
miRNA:   3'- uaCGGUcUCCCGCG-CC-------------UGG-GGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 24377 0.67 0.42445
Target:  5'- -gGCCAGcuccAGGGCGCGGcGCCuUCGCucuCCg -3'
miRNA:   3'- uaCGGUC----UCCCGCGCC-UGG-GGCGc--GG- -5'
29147 5' -65.4 NC_006146.1 + 27364 0.67 0.42445
Target:  5'- -gGCCGGGGGGCGUcuGGACagcagcaaCCGgGgCa -3'
miRNA:   3'- uaCGGUCUCCCGCG--CCUGg-------GGCgCgG- -5'
29147 5' -65.4 NC_006146.1 + 28233 0.67 0.42445
Target:  5'- -aGCCGGAGGGCagGUGG-CUgCGauaGCCg -3'
miRNA:   3'- uaCGGUCUCCCG--CGCCuGGgGCg--CGG- -5'
29147 5' -65.4 NC_006146.1 + 49622 0.67 0.431956
Target:  5'- cUGuCCAGAGGGCagGUGcacGGCCCCgugaacgaagcggGCGCCc -3'
miRNA:   3'- uAC-GGUCUCCCG--CGC---CUGGGG-------------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 10983 0.67 0.431956
Target:  5'- aAUGcCCAGAuGGUGCcccccaucuucgaGGGCCCCG-GCCu -3'
miRNA:   3'- -UAC-GGUCUcCCGCG-------------CCUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 55772 0.67 0.432795
Target:  5'- -gGCCAG-GGGCaGCGaGGCCaCCaCGCUg -3'
miRNA:   3'- uaCGGUCuCCCG-CGC-CUGG-GGcGCGG- -5'
29147 5' -65.4 NC_006146.1 + 33425 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33518 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33611 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33797 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33890 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33704 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33332 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.