Results 121 - 140 of 288 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 24377 | 0.67 | 0.42445 |
Target: 5'- -gGCCAGcuccAGGGCGCGGcGCCuUCGCucuCCg -3' miRNA: 3'- uaCGGUC----UCCCGCGCC-UGG-GGCGc--GG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 50283 | 0.67 | 0.423621 |
Target: 5'- -gGCCAaGGGGCGCaGGagaucugucaggcGCCgCCGgGCCu -3' miRNA: 3'- uaCGGUcUCCCGCG-CC-------------UGG-GGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 120830 | 0.68 | 0.419489 |
Target: 5'- gGUGCCgcacaagcgcuuccuGGAGGGCcuGCuGGACugcgccucccuCCUGCGCCu -3' miRNA: 3'- -UACGG---------------UCUCCCG--CG-CCUG-----------GGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 67672 | 0.68 | 0.416202 |
Target: 5'- -aGCCAcc--GCGCGGAUCUCGCGCg -3' miRNA: 3'- uaCGGUcuccCGCGCCUGGGGCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 151307 | 0.68 | 0.416202 |
Target: 5'- cGUGUaGGAGGGC-CaGGAgcuguCCUCGCGCCg -3' miRNA: 3'- -UACGgUCUCCCGcG-CCU-----GGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 72024 | 0.68 | 0.4113 |
Target: 5'- -aGCgGGGGaguggguggugacucGGCGCaGGcACCCCGcCGCCa -3' miRNA: 3'- uaCGgUCUC---------------CCGCG-CC-UGGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 168338 | 0.68 | 0.408052 |
Target: 5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3' miRNA: 3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 42844 | 0.68 | 0.408052 |
Target: 5'- -gGCCucGAGGGcCGCcaGGCCCaCGCGCa -3' miRNA: 3'- uaCGGu-CUCCC-GCGc-CUGGG-GCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 170201 | 0.68 | 0.408052 |
Target: 5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3' miRNA: 3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 147106 | 0.68 | 0.408052 |
Target: 5'- -gGCgAGcuGGGGCucaGCGGGCCCCagacGCGCa -3' miRNA: 3'- uaCGgUC--UCCCG---CGCCUGGGG----CGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 167406 | 0.68 | 0.408052 |
Target: 5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3' miRNA: 3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 169270 | 0.68 | 0.408052 |
Target: 5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3' miRNA: 3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 170680 | 0.68 | 0.408052 |
Target: 5'- -gGCCAG-GGGCGCcccggGGACCgUCGCGg- -3' miRNA: 3'- uaCGGUCuCCCGCG-----CCUGG-GGCGCgg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 53461 | 0.68 | 0.400003 |
Target: 5'- cUGCCcGGGaGGCGCGGguGCCUCGUcgGUCa -3' miRNA: 3'- uACGGuCUC-CCGCGCC--UGGGGCG--CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 128193 | 0.68 | 0.400003 |
Target: 5'- cUGCCAGcccgagcGGGCGCugggGGGCUCUGCcaGCCu -3' miRNA: 3'- uACGGUCu------CCCGCG----CCUGGGGCG--CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33478 | 0.68 | 0.399204 |
Target: 5'- -gGUCGGgaagggaGGGGCGUGGuCCCCGgGaCCc -3' miRNA: 3'- uaCGGUC-------UCCCGCGCCuGGGGCgC-GG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 30205 | 0.68 | 0.399204 |
Target: 5'- -aGCCAGAGGGC-CGcuGCgCCCGCcgggcugGCCg -3' miRNA: 3'- uaCGGUCUCCCGcGCc-UG-GGGCG-------CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 59724 | 0.68 | 0.388907 |
Target: 5'- -gGUCGGGGGGCGCaucucucgccuCCCCgaGCGCCu -3' miRNA: 3'- uaCGGUCUCCCGCGccu--------GGGG--CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 11817 | 0.68 | 0.384213 |
Target: 5'- cUGCaGGAGGGgaagGUgGGACCCCuuGCGCCg -3' miRNA: 3'- uACGgUCUCCCg---CG-CCUGGGG--CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 9909 | 0.68 | 0.384213 |
Target: 5'- -gGCCAGgcaGGaGGCGaCGGAgCCCGCGa- -3' miRNA: 3'- uaCGGUC---UC-CCGC-GCCUgGGGCGCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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