miRNA display CGI


Results 141 - 160 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 126196 0.68 0.384213
Target:  5'- -gGCCAGcGGGgGCcacGGCCaCCGcCGCCa -3'
miRNA:   3'- uaCGGUCuCCCgCGc--CUGG-GGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 21030 0.68 0.384213
Target:  5'- aGUGCCggggauucucGGAGGGCGa-GACgCUGCGCUu -3'
miRNA:   3'- -UACGG----------UCUCCCGCgcCUGgGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 72477 0.68 0.384213
Target:  5'- --aCCGGuucuGGGCGCuu-CCCCGUGCCu -3'
miRNA:   3'- uacGGUCu---CCCGCGccuGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 101250 0.68 0.384213
Target:  5'- -aGCUGGAGGaggacCGCGGGCCCauuaGcCGCCc -3'
miRNA:   3'- uaCGGUCUCCc----GCGCCUGGGg---C-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 9909 0.68 0.384213
Target:  5'- -gGCCAGgcaGGaGGCGaCGGAgCCCGCGa- -3'
miRNA:   3'- uaCGGUC---UC-CCGC-GCCUgGGGCGCgg -5'
29147 5' -65.4 NC_006146.1 + 47527 0.68 0.376474
Target:  5'- -aGCCAGGuuGCG-GGGCCCCcggccaGCGCCa -3'
miRNA:   3'- uaCGGUCUccCGCgCCUGGGG------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 123656 0.68 0.376474
Target:  5'- -gGCCAGGGGccaCGUcGA-CCCGCGCCa -3'
miRNA:   3'- uaCGGUCUCCc--GCGcCUgGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 15968 0.68 0.368841
Target:  5'- -aGaCCuGGGGGCGUu--CCCUGCGCCu -3'
miRNA:   3'- uaC-GGuCUCCCGCGccuGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 114301 0.68 0.368841
Target:  5'- -cGCCggcgaGGAGaccGGCgGCGGGCUCgGCGCCc -3'
miRNA:   3'- uaCGG-----UCUC---CCG-CGCCUGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 114075 0.68 0.368841
Target:  5'- -cGCCAGAGGcCGCcucGGgggccagaaGCCCCGCccGCCa -3'
miRNA:   3'- uaCGGUCUCCcGCG---CC---------UGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 44692 0.68 0.368841
Target:  5'- gAUGCCGGuGuGGCgGCGGuggccguggcCCCCGCugGCCg -3'
miRNA:   3'- -UACGGUCuC-CCG-CGCCu---------GGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 48233 0.68 0.368841
Target:  5'- -cGCCuggguGAGcgccGCGCGGAgggcCCCCGcCGCCg -3'
miRNA:   3'- uaCGGu----CUCc---CGCGCCU----GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 44783 0.68 0.365818
Target:  5'- cGUGCCgggcucaGGGGGGCGCagcgucuaauacugGGACCUCuguagggggccgGCGCCc -3'
miRNA:   3'- -UACGG-------UCUCCCGCG--------------CCUGGGG------------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 168838 0.69 0.361315
Target:  5'- aAUGCCGacGAGGGCcaacucuCGGGCCCUcucuugGCGCUg -3'
miRNA:   3'- -UACGGU--CUCCCGc------GCCUGGGG------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 56578 0.69 0.360569
Target:  5'- -cGUCAGGggcggccGGGCGCcGAgCCCGcCGCCg -3'
miRNA:   3'- uaCGGUCU-------CCCGCGcCUgGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 41771 0.69 0.360568
Target:  5'- -cGCCGGAGGcccuGCGCccGGGCgCCCGCucucaggcccucuGCCg -3'
miRNA:   3'- uaCGGUCUCC----CGCG--CCUG-GGGCG-------------CGG- -5'
29147 5' -65.4 NC_006146.1 + 168586 0.69 0.353897
Target:  5'- cGUGCCGGGGGaccCGgGGGCguguCCCGCGaCCc -3'
miRNA:   3'- -UACGGUCUCCc--GCgCCUG----GGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 34089 0.69 0.353897
Target:  5'- gGUcCCGGGGGGCaGcCGcGACCCagCGCGCCc -3'
miRNA:   3'- -UAcGGUCUCCCG-C-GC-CUGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 113956 0.69 0.353897
Target:  5'- cUGCUugaacuggaagaGGGGGGUGCccggGGGCUCCGCGUUg -3'
miRNA:   3'- uACGG------------UCUCCCGCG----CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 103265 0.69 0.353897
Target:  5'- gAUGCCuacAGGGGGCGCcuuccacuGGCCUCG-GCCg -3'
miRNA:   3'- -UACGG---UCUCCCGCGc-------CUGGGGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.