miRNA display CGI


Results 101 - 120 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 35469 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 35512 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 35562 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 35605 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 35655 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 35698 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 35748 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 37382 0.68 0.384213
Target:  5'- -aGCCAGuGGGUcuuaGCaGGCCCCaaGCCc -3'
miRNA:   3'- uaCGGUCuCCCG----CGcCUGGGGcgCGG- -5'
29147 5' -65.4 NC_006146.1 + 39671 0.67 0.467101
Target:  5'- -gGCCuuGGAGGcG-GCGGGCuCCUGgGCCu -3'
miRNA:   3'- uaCGG--UCUCC-CgCGCCUG-GGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 41771 0.69 0.360568
Target:  5'- -cGCCGGAGGcccuGCGCccGGGCgCCCGCucucaggcccucuGCCg -3'
miRNA:   3'- uaCGGUCUCC----CGCG--CCUG-GGGCG-------------CGG- -5'
29147 5' -65.4 NC_006146.1 + 41831 0.66 0.530257
Target:  5'- -gGCCGGAugucGCGgGGGCUguCUGCGCCg -3'
miRNA:   3'- uaCGGUCUcc--CGCgCCUGG--GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 42376 0.72 0.223153
Target:  5'- -cGCCAGggugggcgaGGGGCGCcccaGGgccACCCCGaCGCCg -3'
miRNA:   3'- uaCGGUC---------UCCCGCG----CC---UGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 42661 0.79 0.07139
Target:  5'- -gGcCCAGAGGuaGCGGAagagcuCCCCGCGCCg -3'
miRNA:   3'- uaC-GGUCUCCcgCGCCU------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 42844 0.68 0.408052
Target:  5'- -gGCCucGAGGGcCGCcaGGCCCaCGCGCa -3'
miRNA:   3'- uaCGGu-CUCCC-GCGc-CUGGG-GCGCGg -5'
29147 5' -65.4 NC_006146.1 + 44078 0.7 0.298474
Target:  5'- cAUGCCGGgacuGGGGUGguuccaccuCGGGCCgCGCGCUc -3'
miRNA:   3'- -UACGGUC----UCCCGC---------GCCUGGgGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 44371 0.7 0.318436
Target:  5'- gGUGCCAGAcccccgcccgggGGGCGUgugGGGCCgggcaCgGCGCCu -3'
miRNA:   3'- -UACGGUCU------------CCCGCG---CCUGG-----GgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 44692 0.68 0.368841
Target:  5'- gAUGCCGGuGuGGCgGCGGuggccguggcCCCCGCugGCCg -3'
miRNA:   3'- -UACGGUCuC-CCG-CGCCu---------GGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 44783 0.68 0.365818
Target:  5'- cGUGCCgggcucaGGGGGGCGCagcgucuaauacugGGACCUCuguagggggccgGCGCCc -3'
miRNA:   3'- -UACGG-------UCUCCCGCG--------------CCUGGGG------------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 44946 0.74 0.176765
Target:  5'- -gGCCAG-GGGCGCGGggagGCCCCGgGg- -3'
miRNA:   3'- uaCGGUCuCCCGCGCC----UGGGGCgCgg -5'
29147 5' -65.4 NC_006146.1 + 45038 0.7 0.305018
Target:  5'- -gGCCuucgaGGAGGGCcucGCGGGCCuuGgGCUu -3'
miRNA:   3'- uaCGG-----UCUCCCG---CGCCUGGggCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.