miRNA display CGI


Results 121 - 140 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 45409 0.7 0.298474
Target:  5'- -cGUCGGuGGGCcagcGCGaGGCCCCG-GCCg -3'
miRNA:   3'- uaCGGUCuCCCG----CGC-CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 45680 0.67 0.441235
Target:  5'- -cGCCAGGGaGCGgaaGGGCUCUgaGCGCCc -3'
miRNA:   3'- uaCGGUCUCcCGCg--CCUGGGG--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 47527 0.68 0.376474
Target:  5'- -aGCCAGGuuGCG-GGGCCCCcggccaGCGCCa -3'
miRNA:   3'- uaCGGUCUccCGCgCCUGGGG------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 47531 0.66 0.511857
Target:  5'- aGUGUCGG-GGGCGCcgccucGGuccuCCUCGCgGCCu -3'
miRNA:   3'- -UACGGUCuCCCGCG------CCu---GGGGCG-CGG- -5'
29147 5' -65.4 NC_006146.1 + 47834 0.69 0.346586
Target:  5'- cUGCCAGAGcGCGgcucucgaGGACCCUcuccuccaGCGCCc -3'
miRNA:   3'- uACGGUCUCcCGCg-------CCUGGGG--------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 48233 0.68 0.368841
Target:  5'- -cGCCuggguGAGcgccGCGCGGAgggcCCCCGcCGCCg -3'
miRNA:   3'- uaCGGu----CUCc---CGCGCCU----GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 48627 0.73 0.1853
Target:  5'- gGUGCC-GuGGGgGCGGGCUCCGgGCg -3'
miRNA:   3'- -UACGGuCuCCCgCGCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 49622 0.67 0.431956
Target:  5'- cUGuCCAGAGGGCagGUGcacGGCCCCgugaacgaagcggGCGCCc -3'
miRNA:   3'- uAC-GGUCUCCCG--CGC---CUGGGG-------------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 50283 0.67 0.423621
Target:  5'- -gGCCAaGGGGCGCaGGagaucugucaggcGCCgCCGgGCCu -3'
miRNA:   3'- uaCGGUcUCCCGCG-CC-------------UGG-GGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 50885 0.7 0.311002
Target:  5'- uGUGcCCGGAcuggcgcGGGUGCGGccuggGCCuCCGUGCCc -3'
miRNA:   3'- -UAC-GGUCU-------CCCGCGCC-----UGG-GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 52825 0.66 0.484772
Target:  5'- cGUGCCcaggaugcGGAGGGC-CGaGCCgCCGcCGCCc -3'
miRNA:   3'- -UACGG--------UCUCCCGcGCcUGG-GGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 52863 0.66 0.521025
Target:  5'- -cGCCcGGGGGCuccagguccGUGGuCCUCGCgGCCc -3'
miRNA:   3'- uaCGGuCUCCCG---------CGCCuGGGGCG-CGG- -5'
29147 5' -65.4 NC_006146.1 + 52920 0.71 0.273386
Target:  5'- -gGCCccccGGGGGCGCuGGCCUCGUccGCCg -3'
miRNA:   3'- uaCGGu---CUCCCGCGcCUGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 52965 0.66 0.529331
Target:  5'- -cGCCGGAGaaGGCcgguagugcgcagGCGGACCugCCG-GCCg -3'
miRNA:   3'- uaCGGUCUC--CCG-------------CGCCUGG--GGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 53175 0.66 0.511857
Target:  5'- -gGCCGGAaGGCuCGGccucgGCCCCG-GCCu -3'
miRNA:   3'- uaCGGUCUcCCGcGCC-----UGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 53461 0.68 0.400003
Target:  5'- cUGCCcGGGaGGCGCGGguGCCUCGUcgGUCa -3'
miRNA:   3'- uACGGuCUC-CCGCGCC--UGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 53494 0.7 0.307667
Target:  5'- -gGCCGGGGGuGCggucuggcucuggcuGCGGGCCgCGCGUg -3'
miRNA:   3'- uaCGGUCUCC-CG---------------CGCCUGGgGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 53600 0.75 0.139152
Target:  5'- gAUGCCGGggaaAGGGCGCGGcACCgggCCGUGCa -3'
miRNA:   3'- -UACGGUC----UCCCGCGCC-UGG---GGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 54864 0.69 0.324617
Target:  5'- -gGCCGGGaaaaauGGGCuGCGGGCguagcgggguccgCUCGCGCCg -3'
miRNA:   3'- uaCGGUCU------CCCG-CGCCUG-------------GGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 55706 0.7 0.292039
Target:  5'- -cGCCGGGGGGCucugcccgccGCuGGCCuCCGCGUa -3'
miRNA:   3'- uaCGGUCUCCCG----------CGcCUGG-GGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.