Results 141 - 160 of 288 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 55772 | 0.67 | 0.432795 |
Target: 5'- -gGCCAG-GGGCaGCGaGGCCaCCaCGCUg -3' miRNA: 3'- uaCGGUCuCCCG-CGC-CUGG-GGcGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 56578 | 0.69 | 0.360569 |
Target: 5'- -cGUCAGGggcggccGGGCGCcGAgCCCGcCGCCg -3' miRNA: 3'- uaCGGUCU-------CCCGCGcCUgGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 57221 | 0.67 | 0.458391 |
Target: 5'- -gGCCGGAggccGGGCcCGGGCCCga-GCCa -3' miRNA: 3'- uaCGGUCU----CCCGcGCCUGGGgcgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 57332 | 0.69 | 0.353897 |
Target: 5'- -gGCUcucuGGGGGCG-GGGCCCCGgGUg -3' miRNA: 3'- uaCGGu---CUCCCGCgCCUGGGGCgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 57384 | 0.73 | 0.1853 |
Target: 5'- -cGCCGGuGGGC-UGG-CCCCGCGaCCg -3' miRNA: 3'- uaCGGUCuCCCGcGCCuGGGGCGC-GG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 57920 | 0.71 | 0.244439 |
Target: 5'- cAUG-CAGAGGGCGCuGG-CCgGCGCCg -3' miRNA: 3'- -UACgGUCUCCCGCGcCUgGGgCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 59724 | 0.68 | 0.388907 |
Target: 5'- -gGUCGGGGGGCGCaucucucgccuCCCCgaGCGCCu -3' miRNA: 3'- uaCGGUCUCCCGCGccu--------GGGG--CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 66459 | 0.66 | 0.530257 |
Target: 5'- cUGCC-GAGGGCGCcGcCCCUGU-CCa -3' miRNA: 3'- uACGGuCUCCCGCGcCuGGGGCGcGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 66711 | 0.69 | 0.346586 |
Target: 5'- -gGCCccguGGGGGCGCagacGGCCCUGCGaCUg -3' miRNA: 3'- uaCGGu---CUCCCGCGc---CUGGGGCGC-GG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 67254 | 0.73 | 0.1853 |
Target: 5'- -gGCUGGGGGGauagGCGGGCCCCuccuccgcGUGCCa -3' miRNA: 3'- uaCGGUCUCCCg---CGCCUGGGG--------CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 67672 | 0.68 | 0.416202 |
Target: 5'- -aGCCAcc--GCGCGGAUCUCGCGCg -3' miRNA: 3'- uaCGGUcuccCGCGCCUGGGGCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 70874 | 0.72 | 0.213113 |
Target: 5'- -cGCgAGAaGcCGCGGACCCCGcCGCCu -3' miRNA: 3'- uaCGgUCUcCcGCGCCUGGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 71424 | 0.71 | 0.255127 |
Target: 5'- -cGUgGGaAGGGCGCGGccggcauuuuggcACCUgGCGCCg -3' miRNA: 3'- uaCGgUC-UCCCGCGCC-------------UGGGgCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 71796 | 0.74 | 0.176348 |
Target: 5'- -gGCCGGAGGGCaggcgcgggacguGCGGACCUgGCuGCg -3' miRNA: 3'- uaCGGUCUCCCG-------------CGCCUGGGgCG-CGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 72024 | 0.68 | 0.4113 |
Target: 5'- -aGCgGGGGaguggguggugacucGGCGCaGGcACCCCGcCGCCa -3' miRNA: 3'- uaCGgUCUC---------------CCGCG-CC-UGGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 72202 | 0.66 | 0.491032 |
Target: 5'- -gGCCGGAuGGGCGgGaGACCagcggccccacccaCUGCGCg -3' miRNA: 3'- uaCGGUCU-CCCGCgC-CUGG--------------GGCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 72477 | 0.68 | 0.384213 |
Target: 5'- --aCCGGuucuGGGCGCuu-CCCCGUGCCu -3' miRNA: 3'- uacGGUCu---CCCGCGccuGGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 72565 | 0.71 | 0.267384 |
Target: 5'- -gGaCCGGGacGGGcCGCGcccGGCCCCGUGCCa -3' miRNA: 3'- uaC-GGUCU--CCC-GCGC---CUGGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 76375 | 0.7 | 0.318436 |
Target: 5'- -cGCCacgAGAGGGCGCgccgggggagGGACCggggGCGCCg -3' miRNA: 3'- uaCGG---UCUCCCGCG----------CCUGGgg--CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 76959 | 0.69 | 0.332292 |
Target: 5'- -cGCCuGGGacGGagaGCGGAgCCCCGcCGCCg -3' miRNA: 3'- uaCGGuCUC--CCg--CGCCU-GGGGC-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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