miRNA display CGI


Results 81 - 100 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 129111 0.71 0.255701
Target:  5'- -cGgCAGAGGGCcugagaGCGGGCgCCCGgGCg -3'
miRNA:   3'- uaCgGUCUCCCG------CGCCUG-GGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 128194 0.71 0.255701
Target:  5'- -gGCCcaGGGGGGCGcCGcGGCgCCGgGCCa -3'
miRNA:   3'- uaCGG--UCUCCCGC-GC-CUGgGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 128193 0.68 0.400003
Target:  5'- cUGCCAGcccgagcGGGCGCugggGGGCUCUGCcaGCCu -3'
miRNA:   3'- uACGGUCu------CCCGCG----CCUGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 127395 0.74 0.164619
Target:  5'- gGUGUCuuGGGGC-UGGGCCCCGcCGCCg -3'
miRNA:   3'- -UACGGucUCCCGcGCCUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 126940 0.66 0.511857
Target:  5'- cUGgCAGGauggcgcucuccGGGCGCGucuggauaGACCCCGC-CCg -3'
miRNA:   3'- uACgGUCU------------CCCGCGC--------CUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 126196 0.68 0.384213
Target:  5'- -gGCCAGcGGGgGCcacGGCCaCCGcCGCCa -3'
miRNA:   3'- uaCGGUCuCCCgCGc--CUGG-GGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 125179 0.71 0.255701
Target:  5'- -gGCCAGgucAGGGuCGUGG-CCCCGCuGCUc -3'
miRNA:   3'- uaCGGUC---UCCC-GCGCCuGGGGCG-CGG- -5'
29147 5' -65.4 NC_006146.1 + 124151 0.67 0.441235
Target:  5'- -gGUCGGGaGGCGaGGACCCUG-GCCa -3'
miRNA:   3'- uaCGGUCUcCCGCgCCUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 123656 0.68 0.376474
Target:  5'- -gGCCAGGGGccaCGUcGA-CCCGCGCCa -3'
miRNA:   3'- uaCGGUCUCCc--GCGcCUgGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 123227 0.66 0.493726
Target:  5'- -aGCUGGuacAGGGCGagguuGGGCCCCuGCGUg -3'
miRNA:   3'- uaCGGUC---UCCCGCg----CCUGGGG-CGCGg -5'
29147 5' -65.4 NC_006146.1 + 122856 0.69 0.346586
Target:  5'- cUGCCc-GGGGCGCuGGACgaCCCGaGCCg -3'
miRNA:   3'- uACGGucUCCCGCG-CCUG--GGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 122649 0.71 0.250017
Target:  5'- -cGCCAGgacGGcGGCGgGGGCCcuCCGCGCg -3'
miRNA:   3'- uaCGGUC---UC-CCGCgCCUGG--GGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 122406 0.66 0.511857
Target:  5'- gGUGCUGGAGacccucaCGCGGAUCCUGgcCGCCa -3'
miRNA:   3'- -UACGGUCUCcc-----GCGCCUGGGGC--GCGG- -5'
29147 5' -65.4 NC_006146.1 + 122247 0.66 0.484772
Target:  5'- -gGCCAGGauucagaaGGCGCuGGGCaCCCGC-CCg -3'
miRNA:   3'- uaCGGUCUc-------CCGCG-CCUG-GGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 121143 0.72 0.213113
Target:  5'- -aGCCGGcgucuGGGCcUGGGCCgCGCGCCc -3'
miRNA:   3'- uaCGGUCu----CCCGcGCCUGGgGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 120830 0.68 0.419489
Target:  5'- gGUGCCgcacaagcgcuuccuGGAGGGCcuGCuGGACugcgccucccuCCUGCGCCu -3'
miRNA:   3'- -UACGG---------------UCUCCCG--CG-CCUG-----------GGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 120027 0.74 0.160739
Target:  5'- -gGCCAGuccGGGCaCaGACCCCGCGCg -3'
miRNA:   3'- uaCGGUCu--CCCGcGcCUGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 118232 0.66 0.492828
Target:  5'- gAUGUCcuggacgAGGGGGCGaggcuGGACgCCCucauGCGCCa -3'
miRNA:   3'- -UACGG-------UCUCCCGCg----CCUG-GGG----CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 117581 0.7 0.291402
Target:  5'- -cGCCGGGccuccucGGGCuCGGACUCCG-GCCa -3'
miRNA:   3'- uaCGGUCU-------CCCGcGCCUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 117028 0.66 0.475895
Target:  5'- -cGCCcuaacGGGGGCGCugaGGGCCagCGuCGCCu -3'
miRNA:   3'- uaCGGu----CUCCCGCG---CCUGGg-GC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.