miRNA display CGI


Results 101 - 120 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 116118 0.66 0.530257
Target:  5'- cUGCCcaa-GGCGCGcucccuggcGGCCCUGCGCUg -3'
miRNA:   3'- uACGGucucCCGCGC---------CUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 116010 0.76 0.111725
Target:  5'- -gGCCAGAcGGCgcgaGCGGACCCCGCuuacGCCc -3'
miRNA:   3'- uaCGGUCUcCCG----CGCCUGGGGCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 115734 0.66 0.511857
Target:  5'- -aGCCu--GGGaCGCGGucacccCCCUGCGCa -3'
miRNA:   3'- uaCGGucuCCC-GCGCCu-----GGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 114758 0.67 0.449768
Target:  5'- -gGCCgcggGGAGGGCucucggucuCGGGgCCCGCgGCCa -3'
miRNA:   3'- uaCGG----UCUCCCGc--------GCCUgGGGCG-CGG- -5'
29147 5' -65.4 NC_006146.1 + 114301 0.68 0.368841
Target:  5'- -cGCCggcgaGGAGaccGGCgGCGGGCUCgGCGCCc -3'
miRNA:   3'- uaCGG-----UCUC---CCG-CGCCUGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 114075 0.68 0.368841
Target:  5'- -cGCCAGAGGcCGCcucGGgggccagaaGCCCCGCccGCCa -3'
miRNA:   3'- uaCGGUCUCCcGCG---CC---------UGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 113956 0.69 0.353897
Target:  5'- cUGCUugaacuggaagaGGGGGGUGCccggGGGCUCCGCGUUg -3'
miRNA:   3'- uACGG------------UCUCCCGCG----CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 109193 0.66 0.502756
Target:  5'- -gGCCcagacAGAGGGCuggacuggcgGCGGuccccaaCCCGUGCCc -3'
miRNA:   3'- uaCGG-----UCUCCCG----------CGCCug-----GGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 103265 0.69 0.353897
Target:  5'- gAUGCCuacAGGGGGCGCcuuccacuGGCCUCG-GCCg -3'
miRNA:   3'- -UACGG---UCUCCCGCGc-------CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 102901 0.66 0.530257
Target:  5'- -cGCCAGGGGcCGUGuGGCguggCUGCGCCc -3'
miRNA:   3'- uaCGGUCUCCcGCGC-CUGg---GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 101250 0.68 0.384213
Target:  5'- -aGCUGGAGGaggacCGCGGGCCCauuaGcCGCCc -3'
miRNA:   3'- uaCGGUCUCCc----GCGCCUGGGg---C-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 99818 0.66 0.526557
Target:  5'- -gGCgAGGGGGUguucggggccucgGUGGAauaggugaagacguCCCCGCGCg -3'
miRNA:   3'- uaCGgUCUCCCG-------------CGCCU--------------GGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 97850 0.69 0.325309
Target:  5'- cUGgaGGAGGGgGCcgccGACCCCGgGCCg -3'
miRNA:   3'- uACggUCUCCCgCGc---CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 97401 0.73 0.203464
Target:  5'- -aGCCu----GCGCGuGACCCCGCGCCu -3'
miRNA:   3'- uaCGGucuccCGCGC-CUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 94026 0.66 0.493726
Target:  5'- -gGcCCGGcaGGGGCaCGG-CCCCgaGCGCCg -3'
miRNA:   3'- uaC-GGUC--UCCCGcGCCuGGGG--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 92696 0.66 0.502756
Target:  5'- -aGUCGGAGGGCaGUGacagcGACCCCucgugGCGUCc -3'
miRNA:   3'- uaCGGUCUCCCG-CGC-----CUGGGG-----CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 92319 0.66 0.511857
Target:  5'- cUGCU--GGGGgGCGGGCCCgGC-CUg -3'
miRNA:   3'- uACGGucUCCCgCGCCUGGGgCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 92289 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92259 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92229 0.66 0.511857
Target:  5'- cUGCU--GGGGgGCGGGCCCgGC-CUg -3'
miRNA:   3'- uACGGucUCCCgCGCCUGGGgCGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.