miRNA display CGI


Results 121 - 140 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 92199 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92169 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92139 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92109 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92050 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92020 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 88789 0.69 0.325309
Target:  5'- uGUGCUAcAGGGCGUGGAgCCUGCuggGCa -3'
miRNA:   3'- -UACGGUcUCCCGCGCCUgGGGCG---CGg -5'
29147 5' -65.4 NC_006146.1 + 77913 0.66 0.475895
Target:  5'- -gGCgCAG-GGGCGgGcGGCCUCGCagguGCCg -3'
miRNA:   3'- uaCG-GUCuCCCGCgC-CUGGGGCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 76959 0.69 0.332292
Target:  5'- -cGCCuGGGacGGagaGCGGAgCCCCGcCGCCg -3'
miRNA:   3'- uaCGGuCUC--CCg--CGCCU-GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 76375 0.7 0.318436
Target:  5'- -cGCCacgAGAGGGCGCgccgggggagGGACCggggGCGCCg -3'
miRNA:   3'- uaCGG---UCUCCCGCG----------CCUGGgg--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 72565 0.71 0.267384
Target:  5'- -gGaCCGGGacGGGcCGCGcccGGCCCCGUGCCa -3'
miRNA:   3'- uaC-GGUCU--CCC-GCGC---CUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 72477 0.68 0.384213
Target:  5'- --aCCGGuucuGGGCGCuu-CCCCGUGCCu -3'
miRNA:   3'- uacGGUCu---CCCGCGccuGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 72202 0.66 0.491032
Target:  5'- -gGCCGGAuGGGCGgGaGACCagcggccccacccaCUGCGCg -3'
miRNA:   3'- uaCGGUCU-CCCGCgC-CUGG--------------GGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 72024 0.68 0.4113
Target:  5'- -aGCgGGGGaguggguggugacucGGCGCaGGcACCCCGcCGCCa -3'
miRNA:   3'- uaCGgUCUC---------------CCGCG-CC-UGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 71796 0.74 0.176348
Target:  5'- -gGCCGGAGGGCaggcgcgggacguGCGGACCUgGCuGCg -3'
miRNA:   3'- uaCGGUCUCCCG-------------CGCCUGGGgCG-CGg -5'
29147 5' -65.4 NC_006146.1 + 71424 0.71 0.255127
Target:  5'- -cGUgGGaAGGGCGCGGccggcauuuuggcACCUgGCGCCg -3'
miRNA:   3'- uaCGgUC-UCCCGCGCC-------------UGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 70874 0.72 0.213113
Target:  5'- -cGCgAGAaGcCGCGGACCCCGcCGCCu -3'
miRNA:   3'- uaCGgUCUcCcGCGCCUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 67672 0.68 0.416202
Target:  5'- -aGCCAcc--GCGCGGAUCUCGCGCg -3'
miRNA:   3'- uaCGGUcuccCGCGCCUGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 67254 0.73 0.1853
Target:  5'- -gGCUGGGGGGauagGCGGGCCCCuccuccgcGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg---CGCCUGGGG--------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 66711 0.69 0.346586
Target:  5'- -gGCCccguGGGGGCGCagacGGCCCUGCGaCUg -3'
miRNA:   3'- uaCGGu---CUCCCGCGc---CUGGGGCGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.