Results 81 - 100 of 288 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 48233 | 0.68 | 0.368841 |
Target: 5'- -cGCCuggguGAGcgccGCGCGGAgggcCCCCGcCGCCg -3' miRNA: 3'- uaCGGu----CUCc---CGCGCCU----GGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 30205 | 0.68 | 0.399204 |
Target: 5'- -aGCCAGAGGGC-CGcuGCgCCCGCcgggcugGCCg -3' miRNA: 3'- uaCGGUCUCCCGcGCc-UG-GGGCG-------CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 147106 | 0.68 | 0.408052 |
Target: 5'- -gGCgAGcuGGGGCucaGCGGGCCCCagacGCGCa -3' miRNA: 3'- uaCGgUC--UCCCG---CGCCUGGGG----CGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 170201 | 0.68 | 0.408052 |
Target: 5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3' miRNA: 3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 151307 | 0.68 | 0.416202 |
Target: 5'- cGUGUaGGAGGGC-CaGGAgcuguCCUCGCGCCg -3' miRNA: 3'- -UACGgUCUCCCGcG-CCU-----GGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 16435 | 0.67 | 0.449768 |
Target: 5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3' miRNA: 3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 25669 | 0.67 | 0.449768 |
Target: 5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3' miRNA: 3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 53494 | 0.7 | 0.307667 |
Target: 5'- -gGCCGGGGGuGCggucuggcucuggcuGCGGGCCgCGCGUg -3' miRNA: 3'- uaCGGUCUCC-CG---------------CGCCUGGgGCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 45409 | 0.7 | 0.298474 |
Target: 5'- -cGUCGGuGGGCcagcGCGaGGCCCCG-GCCg -3' miRNA: 3'- uaCGGUCuCCCG----CGC-CUGGGGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 170288 | 0.71 | 0.273386 |
Target: 5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3' miRNA: 3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 170054 | 0.66 | 0.475895 |
Target: 5'- gAUGUCggGGAGGGCcCGGGgCCgCGCGUg -3' miRNA: 3'- -UACGG--UCUCCCGcGCCUgGG-GCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 52825 | 0.66 | 0.484772 |
Target: 5'- cGUGCCcaggaugcGGAGGGC-CGaGCCgCCGcCGCCc -3' miRNA: 3'- -UACGG--------UCUCCCGcGCcUGG-GGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 170108 | 0.66 | 0.493726 |
Target: 5'- -cGCCgcagGGGGGGCcgGCGGGgcgUCCCGuCGUCa -3' miRNA: 3'- uaCGG----UCUCCCG--CGCCU---GGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33232 | 0.66 | 0.502756 |
Target: 5'- -aGCCGGGuGGCcgccgGCGGGuCCgCCGgGCCg -3' miRNA: 3'- uaCGGUCUcCCG-----CGCCU-GG-GGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 53175 | 0.66 | 0.511857 |
Target: 5'- -gGCCGGAaGGCuCGGccucgGCCCCG-GCCu -3' miRNA: 3'- uaCGGUCUcCCGcGCC-----UGGGGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 67254 | 0.73 | 0.1853 |
Target: 5'- -gGCUGGGGGGauagGCGGGCCCCuccuccgcGUGCCa -3' miRNA: 3'- uaCGGUCUCCCg---CGCCUGGGG--------CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 97401 | 0.73 | 0.203464 |
Target: 5'- -aGCCu----GCGCGuGACCCCGCGCCu -3' miRNA: 3'- uaCGGucuccCGCGC-CUGGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 128194 | 0.71 | 0.255701 |
Target: 5'- -gGCCcaGGGGGGCGcCGcGGCgCCGgGCCa -3' miRNA: 3'- uaCGG--UCUCCCGC-GC-CUGgGGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 20003 | 0.71 | 0.267384 |
Target: 5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3' miRNA: 3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 167493 | 0.71 | 0.273386 |
Target: 5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3' miRNA: 3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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