miRNA display CGI


Results 101 - 120 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 97401 0.73 0.203464
Target:  5'- -aGCCu----GCGCGuGACCCCGCGCCu -3'
miRNA:   3'- uaCGGucuccCGCGC-CUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 128194 0.71 0.255701
Target:  5'- -gGCCcaGGGGGGCGcCGcGGCgCCGgGCCa -3'
miRNA:   3'- uaCGG--UCUCCCGC-GC-CUGgGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 20003 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 167493 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 170288 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 45409 0.7 0.298474
Target:  5'- -cGUCGGuGGGCcagcGCGaGGCCCCG-GCCg -3'
miRNA:   3'- uaCGGUCuCCCG----CGC-CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 53494 0.7 0.307667
Target:  5'- -gGCCGGGGGuGCggucuggcucuggcuGCGGGCCgCGCGUg -3'
miRNA:   3'- uaCGGUCUCC-CG---------------CGCCUGGgGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 34028 0.69 0.332292
Target:  5'- -gGgCAGGcGGGCGUGGuCCCgGgGCCu -3'
miRNA:   3'- uaCgGUCU-CCCGCGCCuGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 57332 0.69 0.353897
Target:  5'- -gGCUcucuGGGGGCG-GGGCCCCGgGUg -3'
miRNA:   3'- uaCGGu---CUCCCGCgCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 94026 0.66 0.493726
Target:  5'- -gGcCCGGcaGGGGCaCGG-CCCCgaGCGCCg -3'
miRNA:   3'- uaC-GGUC--UCCCGcGCCuGGGG--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 143419 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 45038 0.7 0.305018
Target:  5'- -gGCCuucgaGGAGGGCcucGCGGGCCuuGgGCUu -3'
miRNA:   3'- uaCGG-----UCUCCCG---CGCCUGGggCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 14821 0.7 0.292039
Target:  5'- -gGCCggaGGAGGGCacggucuCGGGCCCgGgGCCg -3'
miRNA:   3'- uaCGG---UCUCCCGc------GCCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 33611 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33425 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33332 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 117028 0.66 0.475895
Target:  5'- -cGCCcuaacGGGGGCGCugaGGGCCagCGuCGCCu -3'
miRNA:   3'- uaCGGu----CUCCCGCG---CCUGGg-GC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 118232 0.66 0.492828
Target:  5'- gAUGUCcuggacgAGGGGGCGaggcuGGACgCCCucauGCGCCa -3'
miRNA:   3'- -UACGG-------UCUCCCGCg----CCUG-GGG----CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 33518 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 831 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.