miRNA display CGI


Results 121 - 140 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 33704 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 1142 0.7 0.277651
Target:  5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3'
miRNA:   3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 19967 0.66 0.527481
Target:  5'- -gGCCGG-GGGCGUcugcgaggucaggaGGcCCCaCGaCGCCg -3'
miRNA:   3'- uaCGGUCuCCCGCG--------------CCuGGG-GC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 162581 0.66 0.50185
Target:  5'- -cGCCacGGAGGGuCGgGGGCCCUaacagcacagagaGCGaCCc -3'
miRNA:   3'- uaCGG--UCUCCC-GCgCCUGGGG-------------CGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 3006 0.7 0.277651
Target:  5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3'
miRNA:   3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 831 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 2695 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 1763 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 33332 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 118232 0.66 0.492828
Target:  5'- gAUGUCcuggacgAGGGGGCGaggcuGGACgCCCucauGCGCCa -3'
miRNA:   3'- -UACGG-------UCUCCCGCg----CCUG-GGG----CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 167067 0.7 0.318436
Target:  5'- -gGuCCGGuAGGGCaGCGGggguGCCCCGCcugGCCu -3'
miRNA:   3'- uaC-GGUC-UCCCG-CGCC----UGGGGCG---CGG- -5'
29147 5' -65.4 NC_006146.1 + 50885 0.7 0.311002
Target:  5'- uGUGcCCGGAcuggcgcGGGUGCGGccuggGCCuCCGUGCCc -3'
miRNA:   3'- -UAC-GGUCU-------CCCGCGCC-----UGG-GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 155730 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 152653 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 149575 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 146497 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 143419 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 45038 0.7 0.305018
Target:  5'- -gGCCuucgaGGAGGGCcucGCGGGCCuuGgGCUu -3'
miRNA:   3'- uaCGG-----UCUCCCG---CGCCUGGggCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 14821 0.7 0.292039
Target:  5'- -gGCCggaGGAGGGCacggucuCGGGCCCgGgGCCg -3'
miRNA:   3'- uaCGG---UCUCCCGc------GCCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 117581 0.7 0.291402
Target:  5'- -cGCCGGGccuccucGGGCuCGGACUCCG-GCCa -3'
miRNA:   3'- uaCGGUCU-------CCCGcGCCUGGGGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.