miRNA display CGI


Results 141 - 160 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 3079 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 33030 0.69 0.325309
Target:  5'- cUGCCGGcccGGGGCG-GGGCCCgGgacaCGCCc -3'
miRNA:   3'- uACGGUC---UCCCGCgCCUGGGgC----GCGG- -5'
29147 5' -65.4 NC_006146.1 + 88789 0.69 0.325309
Target:  5'- uGUGCUAcAGGGCGUGGAgCCUGCuggGCa -3'
miRNA:   3'- -UACGGUcUCCCGCGCCUgGGGCG---CGg -5'
29147 5' -65.4 NC_006146.1 + 146131 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 149209 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 34075 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 152653 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 149575 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 831 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 117028 0.66 0.475895
Target:  5'- -cGCCcuaacGGGGGCGCugaGGGCCagCGuCGCCu -3'
miRNA:   3'- uaCGGu----CUCCCGCG---CCUGGg-GC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 143053 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 35698 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 72565 0.71 0.267384
Target:  5'- -gGaCCGGGacGGGcCGCGcccGGCCCCGUGCCa -3'
miRNA:   3'- uaC-GGUCU--CCC-GCGC---CUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 15312 0.71 0.269772
Target:  5'- -gGCCGGAGGccaGCcccggugugccccugGCGGgcGCCCCGCGCg -3'
miRNA:   3'- uaCGGUCUCC---CG---------------CGCC--UGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 1142 0.7 0.277651
Target:  5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3'
miRNA:   3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 2074 0.7 0.277651
Target:  5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3'
miRNA:   3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 3006 0.7 0.277651
Target:  5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3'
miRNA:   3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 45038 0.7 0.305018
Target:  5'- -gGCCuucgaGGAGGGCcucGCGGGCCuuGgGCUu -3'
miRNA:   3'- uaCGG-----UCUCCCG---CGCCUGGggCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 143419 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 146497 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.