Results 61 - 80 of 288 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 92169 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 92199 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34819 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 35469 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 35376 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 35283 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34354 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34726 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34633 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34540 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34447 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33425 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33518 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33611 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33704 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33797 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33890 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33982 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34075 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34168 | 0.67 | 0.441235 |
Target: 5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3' miRNA: 3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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