miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29148 3' -57.8 NC_006146.1 + 136767 0.66 0.879708
Target:  5'- gCUCCGGGAGGcccGGCcGCGauccucCCCCGUGa -3'
miRNA:   3'- aGGGGCUUUCU---CCGuUGC------GGGGCACc -5'
29148 3' -57.8 NC_006146.1 + 113115 0.66 0.879708
Target:  5'- cUCCCCGggGGAuGCcAUGUcuuccgCCgGUGGg -3'
miRNA:   3'- -AGGGGCuuUCUcCGuUGCG------GGgCACC- -5'
29148 3' -57.8 NC_006146.1 + 130720 0.66 0.879019
Target:  5'- -gCCCGAggaggacgAGGAGGCGGCGggcucuuCCCCGg-- -3'
miRNA:   3'- agGGGCU--------UUCUCCGUUGC-------GGGGCacc -5'
29148 3' -57.8 NC_006146.1 + 61861 0.66 0.879019
Target:  5'- cUCCCGGGgcagagguuccacGGGGGC-GCGCCCuCG-GGu -3'
miRNA:   3'- aGGGGCUU-------------UCUCCGuUGCGGG-GCaCC- -5'
29148 3' -57.8 NC_006146.1 + 21411 0.66 0.872726
Target:  5'- aCCUCaGAGAG-GGCAGgGuCCCCaUGGg -3'
miRNA:   3'- aGGGG-CUUUCuCCGUUgC-GGGGcACC- -5'
29148 3' -57.8 NC_006146.1 + 30165 0.66 0.872726
Target:  5'- -aUCCGAGAGcGGCAAC-CCCUGcaccuUGGg -3'
miRNA:   3'- agGGGCUUUCuCCGUUGcGGGGC-----ACC- -5'
29148 3' -57.8 NC_006146.1 + 58869 0.66 0.872726
Target:  5'- gCCCCuucauccuguGAAGGAGGCcugcAACGCCCacuuuUGGc -3'
miRNA:   3'- aGGGG----------CUUUCUCCG----UUGCGGGgc---ACC- -5'
29148 3' -57.8 NC_006146.1 + 161184 0.66 0.872017
Target:  5'- aCCCCaGAAGAugaccaaGGCAACuggcaCCCCGUGc -3'
miRNA:   3'- aGGGGcUUUCU-------CCGUUGc----GGGGCACc -5'
29148 3' -57.8 NC_006146.1 + 167537 0.66 0.872017
Target:  5'- cCCCCGGccccucuccuGGGAGGCcACGUguggaggCCCGcGGa -3'
miRNA:   3'- aGGGGCU----------UUCUCCGuUGCG-------GGGCaCC- -5'
29148 3' -57.8 NC_006146.1 + 89092 0.66 0.872017
Target:  5'- uUCCUCGAccGAugcuaccGGCAcUGCCCCagGUGGc -3'
miRNA:   3'- -AGGGGCUuuCU-------CCGUuGCGGGG--CACC- -5'
29148 3' -57.8 NC_006146.1 + 170332 0.66 0.872017
Target:  5'- cCCCCGGccccucuccuGGGAGGCcACGUguggaggCCCGcGGa -3'
miRNA:   3'- aGGGGCU----------UUCUCCGuUGCG-------GGGCaCC- -5'
29148 3' -57.8 NC_006146.1 + 169401 0.66 0.872017
Target:  5'- cCCCCGGccccucuccuGGGAGGCcACGUguggaggCCCGcGGa -3'
miRNA:   3'- aGGGGCU----------UUCUCCGuUGCG-------GGGCaCC- -5'
29148 3' -57.8 NC_006146.1 + 168469 0.66 0.872017
Target:  5'- cCCCCGGccccucuccuGGGAGGCcACGUguggaggCCCGcGGa -3'
miRNA:   3'- aGGGGCU----------UUCUCCGuUGCG-------GGGCaCC- -5'
29148 3' -57.8 NC_006146.1 + 34624 0.66 0.868439
Target:  5'- gCCCCGAgcuccAGGAccgggcagcggacccGGCAGCGgCCCGg-- -3'
miRNA:   3'- aGGGGCU-----UUCU---------------CCGUUGCgGGGCacc -5'
29148 3' -57.8 NC_006146.1 + 34717 0.66 0.868439
Target:  5'- gCCCCGAgcuccAGGAccgggcagcggacccGGCAGCGgCCCGg-- -3'
miRNA:   3'- aGGGGCU-----UUCU---------------CCGUUGCgGGGCacc -5'
29148 3' -57.8 NC_006146.1 + 34810 0.66 0.868439
Target:  5'- gCCCCGAgcuccAGGAccgggcagcggacccGGCAGCGgCCCGg-- -3'
miRNA:   3'- aGGGGCU-----UUCU---------------CCGUUGCgGGGCacc -5'
29148 3' -57.8 NC_006146.1 + 34995 0.66 0.868439
Target:  5'- gCCCCGAgcuccAGGAccgggcagcggacccGGCAGCGgCCCGg-- -3'
miRNA:   3'- aGGGGCU-----UUCU---------------CCGUUGCgGGGCacc -5'
29148 3' -57.8 NC_006146.1 + 35088 0.66 0.868439
Target:  5'- gCCCCGAgcuccAGGAccgggcagcggacccGGCAGCGgCCCGg-- -3'
miRNA:   3'- aGGGGCU-----UUCU---------------CCGUUGCgGGGCacc -5'
29148 3' -57.8 NC_006146.1 + 35181 0.66 0.868439
Target:  5'- gCCCCGAgcuccAGGAccgggcagcggacccGGCAGCGgCCCGg-- -3'
miRNA:   3'- aGGGGCU-----UUCU---------------CCGUUGCgGGGCacc -5'
29148 3' -57.8 NC_006146.1 + 35274 0.66 0.868439
Target:  5'- gCCCCGAgcuccAGGAccgggcagcggacccGGCAGCGgCCCGg-- -3'
miRNA:   3'- aGGGGCU-----UUCU---------------CCGUUGCgGGGCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.