miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29148 5' -59 NC_006146.1 + 161861 1.08 0.001871
Target:  5'- gCUCCACGGUGGAUAGGCUCCCUGGGAg -3'
miRNA:   3'- -GAGGUGCCACCUAUCCGAGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 161794 1.08 0.001871
Target:  5'- gCUCCACGGUGGAUAGGCUCCCUGGGAg -3'
miRNA:   3'- -GAGGUGCCACCUAUCCGAGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 161995 0.99 0.008492
Target:  5'- gCUCCACGGUGGAUAGGCaCCCUGGGAg -3'
miRNA:   3'- -GAGGUGCCACCUAUCCGaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 161928 0.99 0.008492
Target:  5'- gCUCCACGGUGGAUAGGCaCCCUGGGAg -3'
miRNA:   3'- -GAGGUGCCACCUAUCCGaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 162027 0.77 0.233253
Target:  5'- gCUCCACGGUGGAguGGCaCUgUGGGAa -3'
miRNA:   3'- -GAGGUGCCACCUauCCGaGGgACCCU- -5'
29148 5' -59 NC_006146.1 + 45522 0.77 0.244502
Target:  5'- -gCCACGGUGGGggccUGGGcCUCCUUGGGc -3'
miRNA:   3'- gaGGUGCCACCU----AUCC-GAGGGACCCu -5'
29148 5' -59 NC_006146.1 + 56568 0.73 0.432693
Target:  5'- aCUCCAgGGUGGugaugcAGGCg-CCUGGGGa -3'
miRNA:   3'- -GAGGUgCCACCua----UCCGagGGACCCU- -5'
29148 5' -59 NC_006146.1 + 54422 0.72 0.46831
Target:  5'- cCUCCGCGGUGGAgAGGgUCUC-GGaGAu -3'
miRNA:   3'- -GAGGUGCCACCUaUCCgAGGGaCC-CU- -5'
29148 5' -59 NC_006146.1 + 66256 0.71 0.533975
Target:  5'- uCUCCACGGUGGGgggcAGGgUCUCgcGGGu -3'
miRNA:   3'- -GAGGUGCCACCUa---UCCgAGGGa-CCCu -5'
29148 5' -59 NC_006146.1 + 59832 0.71 0.543639
Target:  5'- uCUCgCACGGUGcGGcucAGGCUCCCgugacucaGGGAg -3'
miRNA:   3'- -GAG-GUGCCAC-CUa--UCCGAGGGa-------CCCU- -5'
29148 5' -59 NC_006146.1 + 91693 0.71 0.551411
Target:  5'- aCUCUACGGUGGcaucgguuuuGGCUCgUUUGGGAg -3'
miRNA:   3'- -GAGGUGCCACCuau-------CCGAG-GGACCCU- -5'
29148 5' -59 NC_006146.1 + 65178 0.7 0.563131
Target:  5'- gCUCUugGGgcucuUGGAgcccUAGGCgcucugggggCCCUGGGAg -3'
miRNA:   3'- -GAGGugCC-----ACCU----AUCCGa---------GGGACCCU- -5'
29148 5' -59 NC_006146.1 + 55654 0.7 0.602614
Target:  5'- --gCACGGUgaaucccuGGGccucucagcUGGGCUCCCUGGGu -3'
miRNA:   3'- gagGUGCCA--------CCU---------AUCCGAGGGACCCu -5'
29148 5' -59 NC_006146.1 + 8886 0.7 0.612552
Target:  5'- aCUCCACcGUGGAgccGGuCUCCCaGGGu -3'
miRNA:   3'- -GAGGUGcCACCUau-CC-GAGGGaCCCu -5'
29148 5' -59 NC_006146.1 + 31611 0.69 0.642423
Target:  5'- -aCCACGGgGGAUGGGCUCaaggCC-GGGc -3'
miRNA:   3'- gaGGUGCCaCCUAUCCGAG----GGaCCCu -5'
29148 5' -59 NC_006146.1 + 33955 0.69 0.642423
Target:  5'- gUCCGCuGGUccGGGUGGGCguggUCCgCUGGGu -3'
miRNA:   3'- gAGGUG-CCA--CCUAUCCG----AGG-GACCCu -5'
29148 5' -59 NC_006146.1 + 45931 0.69 0.642423
Target:  5'- -gCCguaGGUGGAcgGGGuCUCUCUGGGGa -3'
miRNA:   3'- gaGGug-CCACCUa-UCC-GAGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 41297 0.69 0.652375
Target:  5'- gCUCCACGGUGaGGggcagGGGCUUuuUcagaGGGAg -3'
miRNA:   3'- -GAGGUGCCAC-CUa----UCCGAGggA----CCCU- -5'
29148 5' -59 NC_006146.1 + 165794 0.69 0.659332
Target:  5'- -gCCACGGUGGcacggccggcuagggGGGCgUCCCUGGc- -3'
miRNA:   3'- gaGGUGCCACCua-------------UCCG-AGGGACCcu -5'
29148 5' -59 NC_006146.1 + 49519 0.69 0.662311
Target:  5'- aUCgGCGG-GuGAUccggGGGCUCCuCUGGGGg -3'
miRNA:   3'- gAGgUGCCaC-CUA----UCCGAGG-GACCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.