miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29148 5' -59 NC_006146.1 + 108166 0.66 0.829227
Target:  5'- gUCCGCGG-GGcuccGGCUaUCCUGGGc -3'
miRNA:   3'- gAGGUGCCaCCuau-CCGA-GGGACCCu -5'
29148 5' -59 NC_006146.1 + 126031 0.67 0.730767
Target:  5'- gCUgCugGGccgGGAgggacUGGGCUCCCUuGGGu -3'
miRNA:   3'- -GAgGugCCa--CCU-----AUCCGAGGGA-CCCu -5'
29148 5' -59 NC_006146.1 + 49519 0.69 0.662311
Target:  5'- aUCgGCGG-GuGAUccggGGGCUCCuCUGGGGg -3'
miRNA:   3'- gAGgUGCCaC-CUA----UCCGAGG-GACCCU- -5'
29148 5' -59 NC_006146.1 + 92083 0.66 0.803979
Target:  5'- -aUCACGGcugccUGGAcgcgUGGGcCUCCCaGGGAg -3'
miRNA:   3'- gaGGUGCC-----ACCU----AUCC-GAGGGaCCCU- -5'
29148 5' -59 NC_006146.1 + 141162 0.66 0.832482
Target:  5'- -gCUGCGGUGGuu-GGUUCCCUcuuuauguagacaccGGGGc -3'
miRNA:   3'- gaGGUGCCACCuauCCGAGGGA---------------CCCU- -5'
29148 5' -59 NC_006146.1 + 33394 0.66 0.829227
Target:  5'- gCUCCG-GGUGGGggguGGCcCgCCUGGGc -3'
miRNA:   3'- -GAGGUgCCACCUau--CCGaG-GGACCCu -5'
29148 5' -59 NC_006146.1 + 33955 0.69 0.642423
Target:  5'- gUCCGCuGGUccGGGUGGGCguggUCCgCUGGGu -3'
miRNA:   3'- gAGGUG-CCA--CCUAUCCG----AGG-GACCCu -5'
29148 5' -59 NC_006146.1 + 45931 0.69 0.642423
Target:  5'- -gCCguaGGUGGAcgGGGuCUCUCUGGGGa -3'
miRNA:   3'- gaGGug-CCACCUa-UCC-GAGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 90226 0.67 0.740291
Target:  5'- ---gGCGGUGGAggAGGCagCCgaGGGAg -3'
miRNA:   3'- gaggUGCCACCUa-UCCGa-GGgaCCCU- -5'
29148 5' -59 NC_006146.1 + 23489 0.66 0.820971
Target:  5'- --gUACGGgcuGGUGGGCUCgCuCUGGGAg -3'
miRNA:   3'- gagGUGCCac-CUAUCCGAG-G-GACCCU- -5'
29148 5' -59 NC_006146.1 + 91693 0.71 0.551411
Target:  5'- aCUCUACGGUGGcaucgguuuuGGCUCgUUUGGGAg -3'
miRNA:   3'- -GAGGUGCCACCuau-------CCGAG-GGACCCU- -5'
29148 5' -59 NC_006146.1 + 123475 0.66 0.786397
Target:  5'- aCUCCAUGGacggcaUGGAggagcugAGGCUggCCCUGGc- -3'
miRNA:   3'- -GAGGUGCC------ACCUa------UCCGA--GGGACCcu -5'
29148 5' -59 NC_006146.1 + 8919 0.66 0.795258
Target:  5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3'
miRNA:   3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5'
29148 5' -59 NC_006146.1 + 8985 0.66 0.795258
Target:  5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3'
miRNA:   3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5'
29148 5' -59 NC_006146.1 + 141900 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 165794 0.69 0.659332
Target:  5'- -gCCACGGUGGcacggccggcuagggGGGCgUCCCUGGc- -3'
miRNA:   3'- gaGGUGCCACCua-------------UCCG-AGGGACCcu -5'
29148 5' -59 NC_006146.1 + 41297 0.69 0.652375
Target:  5'- gCUCCACGGUGaGGggcagGGGCUUuuUcagaGGGAg -3'
miRNA:   3'- -GAGGUGCCAC-CUa----UCCGAGggA----CCCU- -5'
29148 5' -59 NC_006146.1 + 31611 0.69 0.642423
Target:  5'- -aCCACGGgGGAUGGGCUCaaggCC-GGGc -3'
miRNA:   3'- gaGGUGCCaCCUAUCCGAG----GGaCCCu -5'
29148 5' -59 NC_006146.1 + 8886 0.7 0.612552
Target:  5'- aCUCCACcGUGGAgccGGuCUCCCaGGGu -3'
miRNA:   3'- -GAGGUGcCACCUau-CC-GAGGGaCCCu -5'
29148 5' -59 NC_006146.1 + 55654 0.7 0.602614
Target:  5'- --gCACGGUgaaucccuGGGccucucagcUGGGCUCCCUGGGu -3'
miRNA:   3'- gagGUGCCA--------CCU---------AUCCGAGGGACCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.