miRNA display CGI


Results 1 - 20 of 317 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 54730 0.66 0.700815
Target:  5'- aGGGCGgCCgagGGGAGACUCaGGUcgCUg -3'
miRNA:   3'- -UCCGUgGGa--CCCUCUGGG-CCGaaGGg -5'
29149 3' -62.1 NC_006146.1 + 43826 0.66 0.681596
Target:  5'- --cCGCCCUGGcccuUUCGGCUUCCCg -3'
miRNA:   3'- uccGUGGGACCcucuGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 43276 0.66 0.681596
Target:  5'- aGGGCGgCCU-GGAGGUCCGGCaggugCCUa -3'
miRNA:   3'- -UCCGUgGGAcCCUCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 47749 0.66 0.681596
Target:  5'- gGGGCugGCCCUGGG-GACggagagCGGCcucUUCUCg -3'
miRNA:   3'- -UCCG--UGGGACCCuCUGg-----GCCG---AAGGG- -5'
29149 3' -62.1 NC_006146.1 + 42717 0.66 0.681596
Target:  5'- cGGCGCCCcccUGGGccgccuCCCGGCgUCgCu -3'
miRNA:   3'- uCCGUGGG---ACCCucu---GGGCCGaAGgG- -5'
29149 3' -62.1 NC_006146.1 + 91771 0.66 0.681596
Target:  5'- uGGGUG-CCUGGG-GugCCGuGCUggcaCCCg -3'
miRNA:   3'- -UCCGUgGGACCCuCugGGC-CGAa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 35737 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 35644 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 35551 0.66 0.677733
Target:  5'- cGGC-CCCgagcuccaggaccGGGcagcGGACCCGGCagcggCCCg -3'
miRNA:   3'- uCCGuGGGa------------CCC----UCUGGGCCGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 145690 0.66 0.681596
Target:  5'- cAGGCucaccaccacagACCCcagacccGAGACCCGGCcugCCCa -3'
miRNA:   3'- -UCCG------------UGGGacc----CUCUGGGCCGaa-GGG- -5'
29149 3' -62.1 NC_006146.1 + 122267 0.66 0.691228
Target:  5'- uGGGCACCCgcccGGAGcccGCCCccacGGCa-CCCg -3'
miRNA:   3'- -UCCGUGGGac--CCUC---UGGG----CCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 127562 0.66 0.691228
Target:  5'- cGGGCugcgccugcugGCCCUGGGcGGCCgaGGCcgCgCCg -3'
miRNA:   3'- -UCCG-----------UGGGACCCuCUGGg-CCGaaG-GG- -5'
29149 3' -62.1 NC_006146.1 + 78831 0.66 0.700815
Target:  5'- cAGGCAgCCguguccggGGGAGAgaacUCCGGCagacUCCg -3'
miRNA:   3'- -UCCGUgGGa-------CCCUCU----GGGCCGa---AGGg -5'
29149 3' -62.1 NC_006146.1 + 105789 0.66 0.697944
Target:  5'- aGGGCACCCaGGGcucccagacgggaaAGAacaCCCaGGggUCCCc -3'
miRNA:   3'- -UCCGUGGGaCCC--------------UCU---GGG-CCgaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 157270 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 154192 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 151114 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 148036 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 144958 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 141880 0.66 0.691228
Target:  5'- gAGGCugC-UGGG-GACCagGGCcUCCUg -3'
miRNA:   3'- -UCCGugGgACCCuCUGGg-CCGaAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.